Talks and seminars

Seminars

Machine learning unveils insights into rules governing microRNA-target interactions

Dr. Isana Veksler-Lublinsky, Department of Software and Information Systems Engineering, BGU | March 27, 2024 | Abstract

Developing AI-Assisted Diagnosis Systems for Rare Diseases

Prof. Ting Chen, Department of Computer Science, Tsinghua University | March 20, 2024 | Abstract

Deep learning and generalization performance for unstructured medical data analysis

Dr. Joachim A. Behar, Faculty of Biomedical Engineering, Technion-IIT | March 6, 2024 | Abstract

Epigenomics of human disease

Dr. Yotam Drier, The Lautenberg Center for Immunology and Cancer Research, Faculty of Medicine, HUJI | February 21, 2024 | Abstract

Generative models for peptide design

Dr. Jérôme Tubiana, School of Computer Science, TAU | January 31, 2024 | Abstract

Robust identification of systematic genomic variation at the single-cell level

Dr. Elior Rahmani | December 28, 2022 | Abstract

Statistical challenges and methods for studying disease heterogeneity in epidemiologic research

Prof. Daniel Nevo | December 7, 2022 | Abstract

Multiomic data from 1148 chronic lymphocytic leukemia patients delineates their molecular map and its impact on outcome

Dr. Binyamin A. Knisbacher | September 7, 2022 | Abstract

Predicting molecular mechanisms of hereditary diseases by using their tissue-selective manifestation

Prof. Esti Yeger-Lotem | May 11, 2022 | Abstract

Mapping paths of tumor evolution with single cell phylogenetics

Prof. Nir Yosef | April 6, 2022 |

Spatial modeling of variants in complement genes associated with age-related macular degeneration

Dr. Michelle Grunin | January 19, 2022 |

Microbiota and cancer - an ecological journey

Dr. Ben Boursi | December 8, 2021 |

In sickness and in health – Roles of RNA modifications in human disease and across evolution

Dr. Aldema Sas-Chen | October 20, 2021 | Abstract

A tale of four tales and more

Prof. Eytan Ruppin, Chief, Cancer Data Science Lab, NCI, NIH | August 4, 2021 | Abstract

The Future of Predictive Medicine

Dr. Ben Y. Reis, Director, Predictive Medicine Group, Harvard Medical School | July 21, 2021 | Abstract

Research in the data-rich biomedical era to advance precision medicine

Prof. Dvir Aran, Faculty of Biology, the Taub Faculty of Computer Science (secondary appointment), and the Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, the Technion | December 23, 2020 | Abstract

How AI is transforming cancer diagnosis in live clinical setting

Dr. Chaim Linhart, Co-founder & CTO, Ibex Medical Analytics | September 9, 2020 | Abstract

Two PTSD subgroups identified by resting-state fMRI computational analysis

Dr. Adi Maron-Katz, Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University | February 26, 2020 | Abstract

The evolution of aneuploidy in cancer models: Perils and opportunities

Dr. Uri Ben-David, Dept. of Human Molecular Genetics & Biochemistry, School of Medicine, TAU | January 8, 2020 | Abstract

Trapped between pathogens and autoimmunity: The evolution of the mammalian immune system

Dr. Tzachi Hagai, School of Molecular Cell Biology & Biotechnology, Life Sciences, TAU | December 18, 2019 | Abstract

The accelerated evolution of oncology treatment, real life practice

Dr. MD Ronen Brenner, Head of Oncology Institute, The Edith Wolfson Medical Center, Holon | January 23, 2019 |

Learning to act from observational health data

Dr. Uri Shalit, Statistics & Information Systems Engineering, Faculty of Industrial Engineering and Management, Technion. | October 17, 2018 | Abstract

Predictive Modeling in Stem Cell Transplantation: Lessons Learned and Future Challenges

Roni Shouval MD, PhD, Hematology Division, Talpiot Medical Leadership Program, Chaim Sheba Medical Center, Tel-HaShomer, Israel | July 25, 2018 | Abstract

Deep learning for protein-RNA interactions

Dr. Yaron Orenstein, Department of Electrical and Computer Engineering, Ben-Gurion University | May 2, 2018 | Abstract

Dynamic investigation of inflammation markers for early detection of cytokine storm

Prof. MD. Shlomo Berliner, Head of the Dept. of Internal Medicine at the Tel Aviv Sourasky Medical Center, Ichilov | November 1, 2017 | Abstract

Big Data in Health Care - a Game Changer

Prof. MD. Varda Shalev, Director, Institute for Health, Research & Innovations, Maccabi Healthcare Services | October 25, 2017 | Abstract

Mapping and Modeling of Microbial Cellular Networks

Prof. James Galagan, Departments of Biomedical Engineering and Microbiology; National Emerging Infectious Diseases Laboratory, Boston University. | July 19, 2017 | Abstract

Detecting transcript fusions for transcriptome diagnostics

Lior Pachter | April 5, 2017 | Abstract

Genetic Media

Yaniv Erlich | December 21, 2016 | Abstract

Data-driven innovation in healthcare

Ran Balicer | December 14, 2016 | Abstract

Genetic and Epigenetic Determinants of Leukemia Evolution

Dan Landau | November 9, 2016 | Abstract

Algorithms for finding significant combinations of mutations in cancer

Fabio Vandin | July 27, 2016 | Abstract

Elucidating Compound Mechanism of Action by Network Dysregulation Analysis in Perturbed Cells

Yishai Shimoni | February 11, 2015 | Abstract

Studying tissue heterogeneity by measuring single-cell gene expression

Effi Kenigsberg | January 21, 2015 | Abstract

From 1D to 3D and back: Explaining and exploiting genome structure

Noam Kaplan | January 7, 2015 | Abstract

Reconstructing Breakage Fusion Bridge architectures using noisy copy numbers

Shay Zakov | March 12, 2014 | Abstract

A global view of the selection forces in the evolution of yeast cis-regulation.

Amos Tanay | February 25, 2014 | Abstract

Cohesin stabilizes interphase chromosomal architecture

Eitan Yaffe | March 20, 2013 | Abstract

RNA-mediated transgenerational inheritance of acquired traits

Oded Rechavi | January 2, 2013 | Abstract

Computational methods of characterizing molecular aberrations on cancer genomes and optimizing treatment outcomes

Chen-Hsiang Yeang | September 3, 2012 | Abstract

Long intervening noncoding RNAs: genomics, evolution and functions in embryonic development

Igor Ulitsky | June 27, 2012 | Abstract

Judith Berman | May 2, 2012 |

Reconstructing Boolean Models of Signaling

Roded Sharan | April 18, 2012 | Abstract

Using Individual Human Genomes to Illuminate the Mysteries of Early Human History

Ilan Gronau | December 21, 2011 | Abstract

Tzachi Pilpel | December 7, 2011 |

Candidate gene prioritization by genomic data fusion

Yves Moreau | June 1, 2011 | Abstract

Uncovering the human cell lineage tree in health and disease: the next grand scientific challenge

Ehud Shapiro | May 5, 2011 | Abstract

Understanding miRNA roles in breast cancer through enrichment networks

Israel Steinfeld | March 16, 2011 | Abstract

A network biology approach to decipher cellular response pathways

Esti Yeger Lotem | February 23, 2011 | Abstract

In vivo transcription factor - target recognition: What can we learn from ChIP-Seq data?

Philipp Bucher | January 25, 2011 | Abstract

An introduction to the personal methylome

Lior Pachter | December 22, 2010 | Abstract

ChemSpaceScanner: A platform for virtual screening of HUGE chemical libraries at high resolution

Rakefet Rosenfeld | October 27, 2010 | Abstract

Prior Knowledge Integration of Gene Networks Data into Gene Expression Analysis

Ofer Lavi | July 28, 2010 | Abstract

Annelyse Thevenin (Paris-Sud University) | June 9, 2010 |

Rolf Backofen | May 4, 2010 |

Room and time change

Pierre Baldi (Safra Lecture) | March 1, 2010 | Abstract

Finding interesting patterns in microarray data

Li Teng (Chinese University of HK) | January 26, 2010 | Abstract

Accurate estimation of expression levels of homologous genes in RNA-seq experiments

Eran Halperin | January 20, 2010 | Abstract

Gal H. Romano | January 6, 2010 |

A report from the 17th Euroconference on Apoptosis

Guy Karlebach | December 30, 2009 | Abstract

On the Roles of Computer Science in Systems Biology

Oded Maler | December 23, 2009 | Abstract

Leveraging genetic variability across populations for the identi.cation of causal variants

Noah Zaitlen | December 16, 2009 | Abstract

Some old and new ideas on efficient seeding for biosequence search

Grgory Kucherov (CNRS LIlle) | December 9, 2009 | Abstract

Finding function in ÔJunk DNAÕ

Nadav Ahituv (UCSF) | December 2, 2009 | Abstract

Utilizing metagenomic data for the study of genes and gene cassettes

Itay Sharon (Technion) | November 25, 2009 | Abstract

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

Moran Yassour (HUJI) | November 18, 2009 | Abstract

The intertwined evolutionary histories of marine Synechococcus and Prochlorococcus

J. Peter Gogarten (University of Connecticut) | November 11, 2009 | Abstract

Pavel Pevzner (UCSD) | October 29, 2009 |

A universal adaptive translation efficiency profile of proteins

Tzachi Pilpel (WIS) | October 21, 2009 | Abstract

Report on International Summer School and Workshop 2009 on Regulatory (Epi-)Genomics

Esther Lou Pass | October 14, 2009 | Abstract

How cells decide on their fate? (OR: Challenges in single cell imaging informatics)

Iftach Nachman | September 30, 2009 | Abstract

In silico methods for genome rearrangement analysis: from identification of common markers to ancestral reconstruction

Graldine Jean (Bordeaux) | August 12, 2009 | Abstract

Discovering motifs in large genomic datasets

Chaim Linhart | July 22, 2009 | Abstract

Sharon Bruckner and Falk Hffner | July 15, 2009 |

Reconstructing Phylogenies from Noisy Metrics

Ilan Gronau (Technion) | July 8, 2009 | Abstract

Methods for the analysis of human genetic variation

Eran Halperin | June 17, 2009 | Abstract

Gene regulation by microRNAs

Noam Shomron | June 10, 2009 | Abstract

Amos Tanay (WIS) | June 3, 2009 |

The Pivotal Role of Cellular Stress in Shaping Genetic Interaction Maps

Ariel Jaimovich (HUJI) | May 27, 2009 | Abstract

Credit Risk Assessment using Logistic Regression and KNN

Guy Harari | May 20, 2009 | Abstract

Conference Report - FEBS-SysBio2009

Guy Karlebach | April 22, 2009 | Abstract

Polynomial time algorithms for clustering and image segmentation problems

Dorit Hochbaum (Berkeley) | March 25, 2009 | Abstract

Genetics with a Twist - Novel Methods for Characterizing Proteins Required for Folding in the Secretory Pathway

Maya Schuldiner (WIS) | February 25, 2009 | Abstract

The Gene-Duplication Problem

Mukul Bansal (Iowa State University) | February 18, 2009 | Abstract

A universal relationship between gene compactness and expression levels in multicellular eukaryotes

Liran Carmel (HUJI) | February 4, 2009 | Abstract

Topology-free querying of protein interaction networks

Sharon Bruckner and Falk Hffner | January 28, 2009 | Abstract

Dynamic Analysis of Molecular Networks

Gal Chechik (Google) | January 21, 2009 | Abstract

Ñ | January 14, 2009 |

Inferring Whole Genome Methylation Status using High-Throughput Sequencing Data

Meromit Schuster (Berkeley) | January 7, 2009 | Abstract

Elad Ziv (UCSF) | December 31, 2008 |

Microbial transcriptome analysis with next generation sequencing

Rotem Sorek (WIS) | December 10, 2008 | Abstract

A report from the 16th Euroconference on Apoptosis

Guy Karlebach | December 3, 2008 | Abstract

Conference reports

Idan Zohar, Guy Karlebach | July 16, 2008 | Abstract

Do Cells Play Dice? Stochasticity and Regulation in Gene Expression

Nir Friedman (Weizmann) | June 18, 2008 | Abstract

Comparing Protein Interaction Networks via a Graph Match-and-Split Algorithm

Sharon Bruckner (TAU) | June 11, 2008 | Abstract

Translational Control: Non-Coding RNAs and Alternative Splicing

Rolf Backofen (University of Freiburg) | May 28, 2008 | Abstract

Linear Work Suffix Array Construction

Ofer Lavi (TAU) | May 21, 2008 | Abstract

Amos Tanay | April 9, 2008 |

The Genographic Project: Background and Some Statistical Challenges

Saharon Rosset (TAU) | March 26, 2008 | Abstract

Optimal solutions for hard graph-modelled clustering problems

Falk Hueffner (TAU) | March 19, 2008 | Abstract

CFinder: Efficient module finder in directed, undirected and weighted networks

Illes Farkas (Eotvos University) | March 5, 2008 | Abstract

Limor Broday (TAU) | February 27, 2008 |

Conference report: 2007 RECOMB regulatory genomics satellite

Daniela Raijman (Google) | February 6, 2008 | Abstract

Identifying genes whose regulation evolves under natural selection in primates

Ran Blekhman (University of Chicago) | January 23, 2008 | Abstract

The making of a molecular time bomb: How does Huntington know when to strike?

Shai Kaplan (Weizmann) | January 16, 2008 | Abstract

Geometric pattern matching using the Earth MoverÕs Distance

Panos Giannopoulos (TAU) | January 9, 2008 | Abstract

Horizons in microbial genomics

Rotem Sorek (Berkeley) | January 2, 2008 | Abstract

Haplotypes in the Germline and in the Soma: Ancestral IBD Segments and Tumor Amplification

Itsik PeÕer (Columbia University) | December 31, 2007 | Abstract

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

Tal Dagan (Heinrich-Heine Universitaet Duesseldorf) | December 26, 2007 | Abstract

Algorithms for Gene Finding, Network Alignment, and Ancestral Population Inference

Serafim Batzoglou (Stanford) | December 20, 2007 | Abstract

Conference report: 2007 CSHL/WT Meeting on Interactome Networks

Igor Ulitsky | December 6, 2007 | Abstract

MAGIC: An Integrative Method for Accurate Genome Mapping

Firas Swidan (TAU) | November 28, 2007 | Abstract

A Modular Approach for Integrative Analysis of Large-scale Gene-expression and Drug-response Data

Sven Bergmann (University of Lausanne) | November 21, 2007 | Abstract

Optimal Solutions for Hard Network Problems in Bioinformatics

Falk Hueffner (TAU + Friedrich-Schiller university of Jena) | October 31, 2007 | Abstract

Conference reports

Michal Ozery-Flato | October 24, 2007 | Abstract

Molecular and structural basis for the organization of protein networks

Yanay Ofran (Columbia University) | October 17, 2007 | Abstract

Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network

Reut Shalgi (Weizmann) | October 10, 2007 | Abstract

Integrated analysis of concurrent microRNA and gene expression in the context of protein interactions

Igor Ulitsky | August 15, 2007 | Abstract

Evaluation of Gene Expressions Clusters via Information Theoretic Measure

Irad Ben-Gal (TAU) | August 1, 2007 | Abstract

The influence of chromatin modifiers on transcription

Israel Steinfeld | July 18, 2007 | Abstract

RECOMB and ECCB conference reports

Michal Ozery-Flato, Yonit Halperin, Ofir Davidovich | July 11, 2007 | Abstract

HGM conference report

Ofir Davidovich | July 4, 2007 | Abstract

Outcome prediction in breast cancer: Machine Learning vs Biology

Eytan Domany (Weizmann) | June 27, 2007 | Abstract

RECOMB conference reports

Igor Ulitsky | June 20, 2007 | Abstract

Inference of Population Structure Using Multilocus Genotype Data

Ofir Davidovich | June 13, 2007 | Abstract

Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites

Daniela Raijman | June 6, 2007 | Abstract

Tree scanning: a tool for studying the genetic architecture of complex traits

Alan Templeton (Washington University) | May 30, 2007 | Abstract

Richard Karp (Berkeley) | May 16, 2007 |

Classification of microarray data using gene networks

Michael Gotkin | May 9, 2007 | Abstract

Discovering Motifs in Ranked Lists of DNA Sequences

Yonit Halperin | April 16, 2007 | Abstract

Finding Informative Regulatory Elements

Noam Slonim (IBM Research) | March 14, 2007 | Abstract

Integrative analysis of diverse large-scale data sets for Hepatitis C disease

Benno Schwikowski (Pasteur Institute) | February 28, 2007 | Abstract

RNAspa: A Breadth-First Search Algorithm to Simultaneously Align and Predict the Secondary Structure of ncRNA Molecules

Yair Horesh (Bar Ilan) | February 14, 2007 | Abstract

Seeds for Homology Search in DNA: Indel Seeds and Parameter Free Calculation of Sensitivity

Gary Benson (Boston University) | January 17, 2007 | Abstract

On the association between domain-domain interactions and protein-protein interactions

Hanah Margalit (HUJI) | January 10, 2007 | Abstract

Inferring Phylogenies via LCA-distances

Ilan Gronau (Technion) | December 27, 2006 | Abstract

Rotem Sorek (Berkeley) | December 20, 2006 |

Yoav Gilad (University of Chicago) | December 14, 2006 |

Conference report

Ofir Davidovich | December 6, 2006 | Abstract

Conference reports

Daniela Raijman and Michal Ozery-Flato | November 8, 2006 | Abstract

Lateral gene transfer in microbial evolution

Uri Gophna (TAU) | November 1, 2006 | Abstract

CPM 2006 conference report

Michal Ozery-Flato | September 20, 2006 | Abstract

Computational Design of RNA Switches

Danny Barash (BGU) | September 6, 2006 | Abstract

The quest for viral ÔphotosynthesisÕ using both metagenomics and environmental genomics

Oded Beja (Technion) | August 16, 2006 | Abstract

Canalization of development by miRNAs

Eran Hornstein (Weizmann) | August 9, 2006 | Abstract

Michal Ozery-Flato | August 2, 2006 |

A Study of Accessible Motifs and RNA Folding Complexity

Michal Ziv-Ukelson | July 26, 2006 | Abstract

Irit Gat-Viks | July 9, 2006 |

We resemble prokaryotes much more than we would like to admit

Yuval Tabach (Weizmann) | July 5, 2006 | Abstract

Gene recruitment and adaptive reprogramming of genetic regulatory networks

Erez Braun (Technion) | June 28, 2006 | Abstract

Igor, Offir, Yonit, Michal Z-U | June 14, 2006 |

Avi Orr-Urtreger (Ichilov) | May 31, 2006 |

Computational Problems in Modern Human Genetics

Gadi Kimmel | May 24, 2006 | Abstract

A Probabilistic Model for the Survivability of Cells

Ilan Adler (Berkeley) | May 16, 2006 | Abstract

Pattern matching with character classes

Chaim Linhart | May 7, 2006 | Abstract

A Genomic Code for Nucleosome Positioning and Chromosome Function

Eran Segal (Weizmann) | April 26, 2006 | Abstract

A New Approach to Protein Identification

Dekel Tsur (Ben Gurion Univ) | March 29, 2006 | Abstract

The Biozon system for complex analysis of heterogeneous interrelated biological data and discovery of emergent structures

Golan Yona (Technion) | March 22, 2006 | Abstract

Reconstructing repeat-annotated phylogenetic trees

Firas Swidan (Technion) | March 15, 2006 | Abstract

A novel inside-out prostanoid signaling pathway that mediates GnRH receptor auto-regulation and LH release

Zvi Naor | March 8, 2006 | Abstract

An Algebraic Model for Sorting by Transpositions

Tzvika Hartman (Bar Ilan) | March 1, 2006 | Abstract

Conference report

Irit Gat-Viks | February 22, 2006 | Abstract

The human transcriptome: Evolution in action

Rotem Sorek | February 1, 2006 | Abstract

EVEREST: Automatic Identification and Classification of Protein Domains in All Protein Sequences

Elon Portugaly (HUJI) | January 25, 2006 | Abstract

Data, technology and populations for genomewide association studies

Itsik PeÕer (Broad Institute) | January 18, 2006 | Abstract

Structural Approximations for Genetic Analysis

Ydo Wexler (Technion) | January 11, 2006 | Abstract

Elucidating function and organization of molecular networks: From Molecules to a System

Dana PeÕer (Harvard Medical School) | January 4, 2006 | Abstract

Information theoretic analysis of biological data

Noam Slonim (Princeton) | December 28, 2005 | Abstract

Conference reports

Michal Ozery-Flato and Rani Elkon | December 14, 2005 | Abstract

Rapid Association Test for SNPs and Haplotypes Using Importance Sampling and Linkage Disequilibrium Decay

Gadi Kimmel | December 7, 2005 | Abstract

Conference report Ð European Networking Summer School

Igor Ulitsky | November 30, 2005 | Abstract

Using expectation-maximization to infer the early evolution of spliceosomal introns

Liran Carmel (NCBI) | November 9, 2005 | Abstract

Reliable protein function prediction by Bayesian phylogenomics

Steve Brenner (Berkeley) | November 2, 2005 | Abstract

Swimming in GOBS of Data

Eugene Kolker (Biatech) | October 30, 2005 | Abstract

Biological context networks: viewing biology via multiple functionalities and milieux

Simon Kasif (Boston U.) | August 17, 2005 | Abstract

Chaim Linhart | August 10, 2005 |

A Sub-quadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrices

Michal Ukelson (Technion) | July 27, 2005 | Abstract

Amos Tanay | July 20, 2005 |

Islands of Tractability for Parsimony Haplotyping

Roded Sharan | July 13, 2005 | Abstract

Contemporary issues in docking and scoring, implication on G protein coupled receptor drug discovery

Yael Marantz (Predix Pharmaceuticals) | June 29, 2005 | Abstract

Regulation of Amino-Acid Polymorphism by Alternative Splicing

Yael Mandel-Gutfreund (U. Haifa) | June 22, 2005 | Abstract

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Jacob Scott (UC Berkeley) | June 8, 2005 | Abstract

Irit Gat-Viks, Igor Ulitsky | June 1, 2005 |

David Sankoff (U. Ottawa) | May 23, 2005 |

Yom Hazikaron | May 11, 2005 |

The factor graph network model for biological systems

Irit Gat-Viks | May 4, 2005 | Abstract

Probabilistic evolutionary models and (a few of) their applications

Tal Pupko (TAU Cell Research and Immunology) | April 20, 2005 | Abstract

Maximum Likelihood of Evolutionary Trees is Hard

Tamir Tuller | April 13, 2005 | Abstract

Information Theoretic Approaches to Whole Genome Phylogenies

David Burstein and Igor Ulitskyi | April 6, 2005 | Abstract

Proteins associated with cancer occupy central positions in the protein-interaction network

Nir Ben-Tal (TAU Biochemistry) | March 30, 2005 | Abstract

Trying to make sense out of the COP9 signalosome

Danny Chamovitz (TAU Botany) | March 23, 2005 | Abstract

Approximation Schemes for Clustering Problems

Yuva Rabani (Technion) | March 16, 2005 | Abstract

Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy

Gad Kimmel | March 9, 2005 | Abstract

closed meeting | March 2, 2005 |

Phenotypic variability in the response to antibiotic

Nathalie Questembert-Balaban (U. Jerusalem) | February 23, 2005 | Abstract

Recent advances in FDR methodology

Daniel Yekutieli (TAU Statistics) | February 2, 2005 | Abstract

Approximation Algorithms for Sorting by Transpositions Problems

Tzvika Hartman (Weizmann) | January 19, 2005 | Abstract

Using Microarrays to Microdissect Cancer Genomes

Zohar Yakhini (Technion) | January 12, 2005 | Abstract

A Tale of three Tales

Eitan Rupin | January 5, 2005 | Abstract

From Sequence to Expression

Eran Segal (Stanford) | December 31, 2004 |

Probabilistic Inference of Alternative Splicing Events in Microarray Data

Ofer Shai (U. Toronto) | December 29, 2004 | Abstract

Conference reports

Gadi Kimmel, Tzvika Hartman, Amos Tanay | December 24, 2004 |

Innovative approaches for discovery of new splice variants

Rotem Sorek | December 22, 2004 | Abstract

Modular epistasis in yeast metabolism

Daniel Segre (Harvard) | December 15, 2004 | Abstract

Algorithmic approaches for analyzing genetic networks

Roded Sharan (Berkeley) | December 10, 2004 |

Yoel Kloog (TAU Neurobiochemsitry) | December 8, 2004 |

Natural Antisense Transcription is Widespread and Conserved in Mammals

Dvir Dahari (compegen) | December 3, 2004 |

Biological Networks Involving Metabolic Pathways and Gene Regulation: Modeling and Inference

Irit Gat-Viks | November 26, 2004 |

Modeling Dependencies in Protein-DNA Binding Sites

Yoseph Barash (HUJI) | November 19, 2004 |

Genome-wide screening for RNA editing sites

Erez Levanon (Compugen) | November 17, 2004 | Abstract

Ultra-Conservation in the Human Genome

Gil Bejerano (UCSC) | November 10, 2004 | Abstract

Amos Tanay | November 3, 2004 |

Sharp: Showcase of ATM Related Pathways

Nir Orlev | October 22, 2004 |

Feature selection finds new features relevant for alternative splicing

Gideon Dror (Tel Aviv College) | October 20, 2004 | Abstract

Conference Report

Ran Elkon & Chaim Linhart | October 13, 2004 | Abstract

The birth of a new exon

Rotem Sorek | October 1, 2004 |

Towards whole genome association studies

Itsik PeÕer (Whitehead Institute, MIT) | July 21, 2004 | Abstract

Approximate Labelled Subtree Homeomorphism and its Application to Metabolic Pathways Analysis

Oleg Rokhlenko (Technion) | July 14, 2004 | Abstract

Qubic: How to effectively combine small chip experiments with the public functional genomics repositories.

Israel Steinfeld | July 7, 2004 | Abstract

Linear Separability and Classifiability of Gene Expression Datasets

Giora Unger | June 30, 2004 | Abstract

Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs

Tamar Barzuza | June 23, 2004 | Abstract

Global and specific exploration of protein synthesis mechanisms in yeast.

Yoav Arava | June 9, 2004 | Abstract

Convex Recoloring of Strings and Trees

Sagi Snir | May 19, 2004 | Abstract

Ontogenetic footprint dominates tissue gene expression

Itai Yanai | May 12, 2004 | Abstract

conference report | May 5, 2004 |

The multiple functions of Pax6 in eye development

Ruth Ashery-Padan | April 28, 2004 | Abstract

From heterogeneous data to regulatory model: a probabilistic approach.

Daphne Koller | April 21, 2004 | Abstract

Adaptation in a genetic switch

Naama Brenner | April 14, 2004 | Abstract

MEX, a novel motif extraction algorithm, and its application to the promoter regions of S. Cerevisiae.

David Horn | March 17, 2004 | Abstract

Did you know that Multiple Alignment is NP-hard?

Isaac Elias | March 10, 2004 | Abstract

Making sense (rather than antisense..) out of multi-knockout experiments

Alon Kaufman | March 3, 2004 | Abstract

The Incomplete Perfect Phylogeny Haplotype Problem

Gad Kimmel | February 18, 2004 | Abstract

A methodology for logical analysis of transcription regulation

Reut Shalgi | January 28, 2004 |

Breast cancer risk: the role of germline mutations in BRCA1/BRCA2 and other genes in familial and sporadic cases

Eytan Friedman (Sheba medical center) | January 21, 2004 |

De novo Repeat Classification, Multiple Alignment, and Fragment Assembly

Pavel Pevzner | January 15, 2004 | Abstract

Analysis of Gene Expression Data: Applications to Studies of Cancer, Differentiation and Stem Cells

Eytan Domani (WIS) | January 14, 2004 |

Preferential Attachment in the Protein Network Evolution

Eli Eisenberg (Compugen) | January 7, 2004 |

Evolution of spliceosomal introns: insights from comparative genomics

Eugene V. Koonin | January 1, 2004 | Abstract

Module Networks: Reconstruction of regulatory moudles and their control programs from gene expression data

Dana PeÕer (HUJI) | December 25, 2003 |

Spectral Clustering of Proteins

Ori Sasson (HUJI) | December 18, 2003 |

Conference Reports

Ron, Irit, Gadi | December 11, 2003 |

Finding Regulatory Patterns in Bacterial Genomes

Eleazer Eskin | December 4, 2003 |

Computational Problems in Genetic Linkage Analysis

Dan Geiger (Technion) | November 27, 2003 |

Resolution of Haplotypes and Haplotype Frequencies from SNP Genotypes of Pooled Samples

Itsik PeÕer (WIS) | November 13, 2003 |

Journal club

Amos Tanay, Irit Gat-Viks | September 24, 2003 |

Restricting SBH Ambiguity via Restriction Enzymes

Sagi Snir (Technion) | September 4, 2003 |

Resolving and Identifying Blocks in Haplotype Data Using a Stochastic Model

Gadi Kimmel | August 13, 2003 |

Lipari Report

Chaim Linhart | August 6, 2003 |

Graph Modification Problems

Noga Amit | July 30, 2003 |

CSH Genome Conference Report. CPM Report

Rotem Soreq, Tzvika Hartman | July 16, 2003 |

Normalization of DNA Chip Data

Adi Maron | June 18, 2003 |

Assembling puzzles by breaking them into smaller pieces

Pavel Pevzner (UC San Diego) | June 3, 2003 |

Motifs and regulation

Marie-France Sagot (INRIA) | June 1, 2003 |

Graph Realization and its use in XOR Haplotyping.

Tamar Barzuza | May 28, 2003 |

A Simpler 1.5-Approximation Algorithm for Sorting by Transpositions

Tzvika Hartman | May 21, 2003 |

Transforming men into mice revisited (a correction to the theory of sorting by reversals and translocations)

Michal Ozery | May 14, 2003 |

Structural Bioinformatics Algorithms and Computer Assisted Drug Design

Haim Wolfson | April 30, 2003 |

Designing Optimally Multiplexed SNP Genotyping Assays

Yonatan Aumann (Bar Ilan U) | April 2, 2003 |

Computational dissections of cellular regulatory networksÊ

Tzachi Pilpel (WIS) | March 26, 2003 |

CSH report

Amos Tanay | March 19, 2003 |

Identifying Blocks and Sub-Populations in Noisy SNP Data

Gadi Kimmel | March 12, 2003 |

Genomic Sorting with Length-Weighted Reversals

Ron Pinter (Technion) | March 5, 2003 |

SAMBA: Integrated Analysis of Highly Heterogeneous Genomic Data

Amos Tanay | February 26, 2003 |

Using comparative genomics to study alternative splicing

Rotem Sorek (TAU, Compugen) | February 19, 2003 |

Resequencing By Hybridization

Dekel Tzur | January 22, 2003 |

Analyzing time series expression data: From individual gene expression to genetic regulatory networks

Ziv Bar Yoseph (MIT) | January 15, 2003 |

Large Scale Recovery of Haplotypes from Genotype Data using Imperfect Phylogeny

Eran Halperin (Berkeley) | January 2, 2003 |

Genome-wide In-silico Identification of Transcriptional Regulators Controlling Cell Cycle in Human Cells

Rani Elkon | January 1, 2003 |

Cell Cycle Control through Splicing

Martin Kupiec | December 24, 2002 |

Large Deviations for Optimal Local Sequence Alignments

Benny Yakir (HUJI) | December 17, 2002 |

ISMB report

Amos Tanay | August 21, 2002 |

The Society of Genes: Networks of Functional Links between Genes by Comparative Genomic

Itai Yanai, WIS | August 14, 2002 |

ISMB Talks

Amos Tanay, Ron Shamir | July 24, 2002 |

Controlling the False Discovery Rate in Behavioral Genetics and Microarrays Analysis ISMB Talks

Yoav Benjamini | July 24, 2002 |

Sorting signed permutations by reversals revisited: How to exploit parallel architectures, randomization, and efficient data structures

Elad Verbin | May 29, 2002 |

RECOMB report

Tzvika Hartman | May 22, 2002 |

Network motifs in the transcriptional regulation network of Escherichia coli

Uri Alon (WIS) | May 8, 2002 |

Denaturing High Performance Liquid Chromatography (DHPLC) and Diagnosis of DNA Alterations

Dani Bercovich (Migal) | April 24, 2002 |

Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem

Benny Chor | April 10, 2002 |

Revealing Modular Organization in the Yeast Transcriptional Program

Jan Ihmels (WIS) | March 20, 2002 |

Handling Long Targets and Errors in Sequencing by Hybridization

Tzvika Hartman | March 13, 2002 |

Using Graphical Probabilistic Models to Understand Gene Expression

Nir Friedman (HUJI) | March 6, 2002 |

Biclustering Gene Expression Data

Roded Sharan | February 11, 2002 |

Uri Keich (USC) | February 1, 2002 |

Four Taxon ML Forks under Molecular Clock: Analytic Solutions

Sagi Snir (Technion) | January 28, 2002 |

On the Complexity of Flexible Approximation Problems

Adi Akavia | January 21, 2002 |

The Restriction Scaffold problem

Ron Shamir | January 9, 2002 |

Journal Club

Rani Elkon, Amos Tanay | January 2, 2002 |

Recognition of Interval Graphs, Interval Probe Graphs, and Circular-arc Graphs

Ross McConnel (Colorado) | November 30, 2001 |

Inferring a set of master regulators in Molecular Networks

Amos Tanay | November 28, 2001 |

Exploiting Redundancy in the Genetic CodeÊ

Steve Skiena (Stony Brook) | November 21, 2001 |

conference reports: SNP 00, Nato comp. bio. SchoolÊ

Itsik PeÕer, Chaim Linhart, Rani Elkon | October 31, 2001 |

Analytic Solutions for Three Taxon MLMC Trees with Variable Rates Across SitesÊ

Benny Chor (Technion) | August 23, 2001 |

Bayesian Netowrks DayÊ

Dana PeÕer (HUJI) | August 8, 2001 |

From gene expression to gene interactionÊ

Rotem Sorek | August 1, 2001 |

Sequences that regulate al[u]ternative splicingÊ

Eran Segal (Stanford) | July 18, 2001 |

Rich Probabilistic Models for Gene ExpressionÊ

Dana PeÕer (HUJI) | July 12, 2001 |

Inferring Subnetworks from Perturbed Expression ProfilesÊ

Ann Bergeron (Univ. du Guebec a Montreal) | July 6, 2001 |

Sorting by Reversals Made SimpleÊ

Adi Akavia | June 27, 2001 |

Analysis of Synthesis Design ProblemÊ

Zohar Yakhini (Agilent) | June 13, 2001 |

Overabundance Analysis with Applications in Cancer Sub-classificationÊ

Maxim Shatsky | June 6, 2001 |

Flexible Alignment of Protein StructuresÊ

Tzvika Hartman and Michal Ozery | May 30, 2001 |

Genome RearrangementsÊ

Rani Elkon / Nir Orlev | May 16, 2001 |

The human genome project / protein interactions

Jaqui Beckman | May 9, 2001 |

From the positional cloning of calpain 3 to SNPs: on genetic and protein diversity

internal meeting | May 2, 2001 |

Scaling Law in Sizes of Protein Sequence FamiliesScaling Law in Sizes of Protein Sequence FamiliesÊ

Ron Unger (BIU) | April 28, 2001 |

Theoretical aspects of disease susceptibility gene discoveryÊ

Ariel Darvasi (HUJI) | April 21, 2001 |

Tissue Classification with Gene Expression ProfilesÊ

Iftach Nachman (HUJI) | March 14, 2001 |

An Information Theoretic Model for Genomic EvolutionÊ

Gill Bejeran (HUJI) | March 7, 2001 |

Conserved evolution of mRNA splicing between group II autocatalytic introns and spliceosomal introns

Gil Ast (TAU) | February 14, 2001 |

Reconstruction of Chromosomal Site Origin Based on Adjacent Haplotypes

Michael Korostishevsky (TAU) | January 31, 2001 |

On the Common Substring Alignment Problem

Michal Ziv-Ukelson (Haifa) | January 17, 2001 |

Identification of the gene causing mucolipidosis type IV

Nili Avidan (Weizmann) | January 10, 2001 |

Gene Expression Microarrays - Survey of ApplicationsÊ

Rani Elkon | December 27, 2000 |

Maximum Weight Hypertrees and Windmill Farms

Nati Srebro (MIT) | December 20, 2000 |

Brute force minimization in an antlion(*) town: The generation of decoy sets for proteins

Chen Kaesar (Weizmann) | December 13, 2000 |

microarray experiments produce only gene lists? Lessons from the use of oligonucleotide microarrays to analyze pulmonary fibrosis in mice and humans.

Naftali Kaminski (Sheba Hospital) | December 6, 2000 |

A Structural EM Algorithm for Phylogenetic InferenceÊ

Itsik PeÕer | November 22, 2000 |