Integrating gene expression and DNA methylation datasets for disjoint sample sets.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2023/09/Intend_Logo-1.png)
Selecting minimizers based on minimum decycling set.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2023/07/MDS_Minimizers_logo-150x150.png)
Long-read mapping using syncmers.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2022/02/Syncmer-logo-1-150x150.png)
CT-FOCS - A database of cell type-specific enhancer-promoter links
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2019/07/ct_focs_logo_small-150x150.jpg)
Dataset adaptive minimizer order generator for binning applications
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2021/12/adaorder-logo-2-150x143.jpg)
3-class classification of metagenome assemblies
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2021/11/3CAC-logo-2-150x150.png)
Accurate module discovery using gene activities and a network
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2020/06/domino_logo-150x150.png)
Multi Omic clustering by Non-Exhaustive Types
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2020/08/monet_logo-150x150.png)
Complete plasmid assembly in metagenomes
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2020/06/scapp_logo-150x150.png)
Empirically correcting the functional significance of GO terms in modules
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2020/06/emp_logo-150x150.png)
PlasClass - Plasmid sequence classifier
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2020/05/PlasClass-logo-2-150x150.png)
NEMO: Neighborhood based multi-omics clustering algorithm
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2019/05/nemo_title-150x150.png)
PROMO - a tool for analysis and visualization of large multi-omic and clinical datasets.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/07/promo_icon.png)
EXPANDER - A one stop-shop platform for all analysis steps of gene expression data.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/ExpanderSmall.png)
Faucet: streaming de novo assembly graph construction
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/11/faucet_new-1.png)
FOCS: A database of human and mouse enhancer-promoter links
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2018/05/focs_logo_large-150x150.png)
Adeptus - A database and tools for multi-disease analysis.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/adeptus_logo_small-150x150.jpg)
Recycler - detecting plasmids from de novo assembly graphs
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/RecyclerLogo-150x150.png)
DOCKS - A software for designing compact universal k-mers hitting set.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/docks-150x150.jpg)
RichMind - Analysis of enrichment within neuroimaging findings
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/RichMindLogo.jpg)
ElemeNT - Tool for detection of core promoter elements.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/ElemeNT_small.jpg)
TWIGS - Three-Way module Inference via Gibbs Sampling.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/twigs_logo2-150x150.png)
Motif finding from high-throughput SELEX
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2024/04/hts-ibis-logo-150x150.jpg)
ModMap - Detecting maps of modules by simultaneous analysis of two biological networks.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Modmap-Logo-150x150.png)
BARCODE - A fast lossless read compression tool based on Bloom filters.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/BARCODE-logo1.png)
ShortCAKE - Designing a shortest DNA sequence that covers all k-mers, exploiting reverse complementarity.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/shortcakeSmall.jpg)
Dicer - A tool for advanced analysis of differential co-expression (DC) case-control gene expression data
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Dicer_Logo_RS_small.png)
RAP - A software for inferring binding site motifs from protein binding microarrays.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/rap_logo_small-150x150.png)
HiDe - A software for inferring highways of horizontal gene transfer.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/HideSmall.png)
Morph - A webtool and software for ranking candidate genes in pathways.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/morph_logo_small.png)
ALLEGRO - Software for simultaneous discovery of cis-regulatory motifs and their associated expression profiles.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/AllegroSmall.png)
AMADEUS - Platform for de novo motif discovery in DNA sequences.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/AmadeusSmall.png)
ModEnt - A tool that reconstructs gene regulatory networks from high throughput experimental data.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/ModentSmall.jpg)
STACK - Analyzing statistical associations among cancer karyotypes.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/StackSmall.jpg)
FAME - A tool for Functional Assignment to MicroRNAs via Enrichment
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/FameSmall.png)
TORQUE - Topology-free querying of protein interaction networks.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/TorqueSmall.png)
SPIKE - (previously SHARP). Signaling pathways integrated knowledge engine.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/SpikeSmall.png)
HYDEN - A software for designing degenerate primers.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/HydenSmall.png)
MetaReg - A tool for modeling of biological systems
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/MetaregYellow.png)
GEVALT - An integrated software for genotype analysis.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/GevaltSmall.png)
PSAT - Evaluating the significance of association scores in whole-genome cohorts with stratification.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Psat.png)
Cofactors - Linking transcription factors and chromatin modifiers.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Cofactors-150x150.jpg)
MATISSE - A tool for joint analysis of interaction networks and gene expression data.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/MatisseSmall.png)
RAT - A software for rapid association tests.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Rat.png)
Cisprof - Evolutionary mechanisms underlying conservation and evolvability in regulatory networks.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/CisprofSmall.png)
SIMBA - System level analysis of yeast by exploring of large-scale biological compendia.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Simba.png)
PREVO - An analysis of the network of selection forces in the evolution of yeast cis-regulation
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Prevo.png)
SAMBA - Module discovery in highly diverse genome-wide datasets using biclustering.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/SambaSmall.png)
GREAL - software for the graph realization Problem.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Greal.png)
PRIMA - A program for finding transcription factors whose binding sites are enriched in a given set of promoters.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/PrimaSmall.png)
PIVOT - Java-based protein interactions visualization tool.
![](https://acgt.cs.tau.ac.il/wp-content/uploads/2017/03/Pivot.png)