Computational Genomics Group - Internal Seminar
Internal seminar schedule, 2014 (maintained by Didi and Gilit).Seminar is held on Wednesday at 11:00, room 309.
Schedule is tentative, please stay tuned.
Presentations are available at gaga\html\group_meeting_presentations\2014
| Date | Journal Club Speaker | Title | Slides | |
| 1.1.2014 | Ron Zeira | A project talk: DCJ double distance approximation | ppt | |
| 8.1.2014 | Kobi Perl | Learning the connection of proteomics and transcriptomics - An overview and an example for a clustering model | ppt | |
| 15.1.2014 | Didi Amar | A project report: Large scale integration of pathways and gene expression for disease multitask classification | ppt | >|
| 22.1.2014 | Dvir Netanely | A project update: "Multi-step feature-dynamic clustering of breast cancer RNA-Seq data". | ppt | |
| 29.1.2014 | Roye Rozov | Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms | ppt | |
| 5.2.2014 | No meeting | |||
| 12.2.2014 | No meeting: Ilanit | |||
| 19.2.2014 | Yaron Orenstein | Projects talk: 1. "A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data"
2. "Reconstruction of binding site motifs from HT-SELEX data". |
ppt | |
| 26.2.2014 | Adi Maron-Katz | Connectivity differences in brain networks | ppt | |
| 5.3.2014 | Ron Zeira | A Polynomial 1.2-Approximation Algorithm for the DCJ Double Distance Problem | ppt | |
| 12.3.2014 | Shay Zakov | Reconstructing Breakage Fusion Bridge architectures using noisy copy numbers | ||
| 19.3.2014 | Rami Eitan | The elusive evidence for chromothripsis | ppt | |
| 26.3.2014 | Kobi Perl | Global quantification of mammalian gene expression control | ppt | |
| 2.4.2014 | No meeting | |||
| 9.4.2014 | Ella Evrone | Tissue specific DNA methylation in normal human breast epithelium and in breast cancer | ||
| 16.4.2014 | No meeting | |||
| 23.4.2014 | Yaron Orenstein | A project talk: The longest sequence that does not cover a k-mer and its reverse-complement.
The introduction will include reference to the following papers: "Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers" "Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs" |
ppt | |
| 30.4.2014 | Didi Amar | Constructing module maps for integrated analysis of heterogeneous biological networks | ppt | |
| 7.5.2014 | Dvir Netanely | A project talk: Feature-Dynamic Clustering | ppt | |
| 14.5.2014 | No meeting | |||
| 21.5.2014 | No meeting | |||
| 28.5.2014 | No meeting | |||
| 4.6.2014 | No meeting | |||
| 11.6.2014 | Shay Ben-Elazar | Spatial chromatin organization | ppt | |
| 18.6.2014 | No meeting | |||
| 25.6.2014 | No meeting | |||
| 2.7.2014 | Roye Rozov | RECOMB summary
Focusing on the following two papers: "Changepoint Analysis for Efficient Variant Calling" "On the representation of de Bruijn graphs" |
ppt | |
| 9.7.2014 | Adi Maron-Katz | OHBM conference highlights and a project talk on: Enrichment analysis in brain networks | ppt | ppt |
| 16.7.2014 | No meeting | |||
| 23.7.2014 | Ron Zeira | Rearrangement-based phylogeny using the Single-Cut-or-Join operation | ppt | |
| 30.7.2014 | Didi Amar | Conference report: ISMB 2014 | ppt | |
| 6.8.2014 | Yaron Orenstein | Conference report: ISMB 2014, covering a highlights paper: "High-throughput genome scaffolding from in vivo DNA interaction frequency", by Kaplan and Dekker, NBT December 2013 | ppt | |
| 13.8.2014 | Rami Eitan | A project talk: Reconstructing cancer karyotypes | ppt | >|
| 20.8.2014 | No meeting | |||
| 27.8.2014 | Jessica Hoffmann | A project talk: The fabulous adventure of mutli-disease classification through PPIs | ||
| 3.9.2014 | No meeting | |||
| 10.9.2014 | No meeting | |||
| 17.9.2014 | Kobi Perl | Coupled Evolution of Transcription and mRNA degradation - an Example of Coupled Regulation Systems.
Presenting two papers: "Coupled Evolution of Transcription and mRNA Degradation" "Widespread promoter-mediated coordination of transcription and mRNA degradation" |
ppt | |
| 24.9.2014 | No meeting | |||
| 1.10.2014 | Guest talk: Sharon Bruckner | Modularity in Brain Networks | ||
| 8.10.2014 | No meeting | |||
| 15.10.2014 | No meeting | |||
| 22.10.2014 | Roye Rozov | Project talk: Plasmid re-cycling with ExSPAnder (of SPAdes) | ppt | >|
| 29.10.2014 | Dvir Netanely | A project talk: 1. Identification of breast cancer subtypes using RNA-Seq expression profiles – Focus on Clinical Data Analysis. 2. First preview of the software platform:"Genomic Sample Analyzer". |
ppt | |
| 5.11.2014 starting at 10:30 | Adi Maron-Katz | A project talk: Detecting enrichment within neural connections | ppt | |
| 12.11.2014 | No Meeting | |||
| 19.11.2014 | Didi Amar | A project talk: Biclustering multiple matrices of time course data | ppt | |
| 26.11.2014 | Ron Zeira | A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data | ppt | |
| 3.12.2014 | Didi Amar | A project talk: Evaluation and integration of annotation pipelines: the potato genome as a test case | ppt | |
| 10.12.2014 | Tom Hait | A project talk: "Expander ChIP-Seq integration" | ppt | |
| 17.12.2014 | Kobi Perl | ceRNA networks identification | ppt | |
| 24.12.2014 | Rami Eitan | Punctuated evolution of prostate cancer genomes | ppt | |
| 31.12.2014 | Dvir Netanely | Project update and a paper: A DNA methylation-based definition of biologically distinct breast cancer subtypes |
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