| Date | Journal Club Speaker | Paper | Research project talk Speaker | Topic | ||
| 3.3.2010 | Ron Shamir |
The connectivity map Lamb et al., Science 2006 | Mukul Bansal | Highways of horizontal gene transfer | ||
| 10.3.2010 | Roye Rozov |
Ultrafast and memory-efficient alignment of short DNA sequences to the human
genome Langmead et al., Genome Biology 2009 |
Eyal David and Arnon Paz | Spike stauts report | ||
| 17.3.2010 | Didi Amar | Genetics of gene
expression and its effect on disease Emilsson et al., Nature 2008 |
Renana Meller | Finding modules in host-pathogen networks | ||
| 24.3.2010 | Ofer Lavi | Learning on
Weighted Hypergraphs to Integrate Protein Interactions and Gene Expressions
for Cancer Outcome Prediction Hwang et al., 2008 Eighth IEEE International Conference on Data Mining |
Guy Karlebach | Conference report: Gene regulatory networks, Woods Hole, October 2009 | ||
| 31.3.2010 | Passover vacation | |||||
| 7.4.2010 | Renana Meller | Genome-wide association data reveal a global map of genetic interactions among protein complexes. Hannum et al. PLoS Genetics, 2009 | ||||
| 14.4.2010 | Guy Harari | Referee report (clustering review paper) | ||||
| 21.4.2010 | no meeting (RECOMB) | |||||
| 28.4.2010 | Mukul Bansal | Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes
Fokkens et al., 2009 PLoS Comput Biol |
Guy Karlebach | Finding Minimal Perturbations in Gene Regulatory Networks | ||
| 4.5.2010 | Safra seminar: Rolf Backofen, Freiburg | "Non-Coding RNAs: How to find them and how to find targets" | ||||
| 12.5.2010 10:00 sharp | Adi Maron-Katz | Multi-level bootstrap analysis of stable clusters in resting-state fMRI
Bellec et al., 2010 NeuroImage |
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| 19.5.2010 | Shavuot | |||||
| 26.5.2010 | no meeting | |||||
| 2.6.2010 | Arnon Paz | Post transcription modifications of histones, mediated gene silencing/activation and enabling DNA repair References | Gal-Hagit Romano | Caffeine, Alcohol and High Temperature Affect Telomere Length | ||
| 9.6.2010 | Annelyse Thevenin (Paris-Sud University) | A pseudo-boolean programming approach to compute differences and similarities between two genomes | ||||
| 16.6.2010 | ||||||
| 30.6.2010 | Mukul Bansal | Conference report: Bertinoro Computational Biology Meeting | Yaron Orenstein | Property testing in directed graphs | ||
| 14.7.2010 Room 209 | Roye Rozov | Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Trapnell et al., 2010 Nature Biotechnology |
||||
| 21.7.2010 | Didi Amar & Yaron Orenstein | ICML: Conference report: Active Learning | Ron | EpiAlignment: boosting sequence alignment with epigenetic information (Xie et al. RECOMB RG 10 review) | ||
| 28.7.2010 | Ofer Lavi | Prior Knowledge Integration of Gene Networks Data into Gene Expression Analysis | ||||
| 4.8.2010 | Didi Amar & Yaron Orenstein | ICML: Conference report: Sparse Modeling | Renana Meller | Bulding modules using iterative network propagation methods | ||
| 11.8.2010 | no meeting (RECOMB) | |||||
| 18.8.2010 | Guy Karlebach | Completing networks using observed data
Akutsu et al., 2009 Proceedings of the 20th international conference on Algorithmic learning theory |
Adi Maron-Katz | Detecting highly correlated regions in fMRI data. | ||
| 25.8.2010 | TAU closed week | |||||
| 6.9.2010 Room 210 | Guy Harari | Referee report(Integrative Analysis of Many Weighted Networks ) | ||||
| 8.9.2010 | Erev Rosh Hashana | |||||
| 15.9.2010 | Mukul Bansal | Arnon Paz & Eyal David | SPIKE project report | |||
| 22.9.2010 | Erev Sukot | |||||
| 27.9.2010 | Sukot Holiday | |||||
| 6.10.2010 | Annelyse Thevenin | Aneuploidy: cells losing their balance. Torres et al. Genetics 2008
The landscape of somatic copy-number alteration across human cancers. Beroukhim et al. Nature 2010 |
Oren Tzfadia | |||
| 13.10.2010 | Renana Meller | Searching for functional gene modules with interaction component models | ||||
| 20.10.2010 | Yaron Orenstein | Roye Rozov | ||||
| 27.10.2010 | Rakefet Rosenfeld | Invited speaker | ||||
| 3.11.2010 | Adi Maron-Katz | Hemisphere- and gender-related differences in small-world brain networks: A resting-state functional MRI study | Arnon Paz | The new SPIKE map | ppt | |
| 10.11.2010 | Guy Karlecach | Dissecting self-renewal in stem cells with RNA interference | ppt | David Amar | Speeding up the Consensus Clustering methodology for microarray data analysis | ppt |
| 17.11.2010 | No meeting | |||||
| 24.11.2010 | Mukul Bansal | Rapid Evolutionary Innovation during an Archean Genetic Expansion (in press) | Oren Tzfadia | Fishing for Novel Carotenoid Biosynthesis Related Genes | ppt | |
| 1.12.2010 | Yaron Orenstein | RECOMB Satellite, NYC Nov 2010, DREAM, Systems Biology and Regulatory Genomics | ppt | Guy Harari | Workshop report: Biclustering Methods for Microarray Data | ppt |
| 8.12.2010 | Annelyse Thevenin | The infinite sites model of genome evolution | ppt | Guy Karlebach | Conference report: RECOMB Satellite, NYC Nov 2010, DREAM, Systems Biology and Regulatory Genomics | ppt |
| 15.12.2010 | Renana Meller | DECOB - exhaustive search for modules based on GE and Network data | Adi Maron-Katz | Automatic Identification of ROIs (Regions of interest) in fMRI data | ppt | |
| 22.12.2010 Orenstein 102 | Invited speaker: Lior Pachter | An introduction to the personal methylome | ||||
| 29.12.2010 | Hershel Safer | Comprehensive mapping of long-range interactions reveals folding principles of the human genome | ppt | Mukul Bansal | Systematic detection of highways of horizontal gene transfer | ppt |