Computational Genomics Group - Internal Seminar
Internal seminar schedule, 2012 (maintained by Didi and Gilit).Seminar is held on Wednesday at 10:30, room 309.
Schedule is tentative, please stay tuned.
Presentations are available at gaga\html\group_meeting_presentations\2012
| Date | Journal Club Speaker | Paper | Slides | Research project talk Speaker | Topic | Presentation | |
| 4.1.2012 | Amir Rubinstein | Regulatory networks modeling with biologists | ppt | Yaron Orenstein | Improved motif finding in PBM data | ppt | |
| 11.1.2012 | Ron Zeira | Finding Dense Subgraphs (and Applications to Gene Annotation Graphs) | ppt | ||||
| 18.1.2012 | Hershel Safer | Comparing NGS Assemblers | ppt | Adi Maron-Katz | Evaluating contiguous bi-clusters of fMRI data in comparison to functionally connected voxel groups detected by other methods | ppt | |
| 25.1.2012 | Annelyse Thevenin | Project summary: 'On the relation between gene organization, functional gene groups and cancer'. | ppt | Arnon Paz | Arnon on: 'Ras signaling and and tumorigenesis - a new map for the Spike site'. | ppt | |
| Eyal David | 'Changes in exon–intron structure during vertebrate evolution affect the splicing pattern of exons' | ppt | |||||
| 1.2.2012 At 11:15 from now on | Roye Rozov | MGMR - Dirichlet alphas behavior and next steps | ppt | ||||
| 8.2.2012 | No meeting | ||||||
| 15.2.2012 | No meeting | ||||||
| 22.2.2012 | No meeting | ||||||
| 29.2.2012 | Didi Amar | Synchronized feature selection from multiple data sets | ppt | ||||
| 7.3.2012 | Ron Zeira | Post-silicon test optimization | ppt | ||||
| 14.3.2012 | No meeting Safra mixer 12-13 | ||||||
| 21.3.2012 | Adi Maron-Katz | Temporally-independent functional modes of spontaneous brain activity | ppt | ||||
| 28.3.2012 | No meeting | ||||||
| 4.4.2012 | No meeting | ||||||
| 11.4.2012 | No meeting | ||||||
| 18.4.2012 | Roded Sharan | Reconstructing Boolean Models of Signaling | |||||
| 25.4.2012 | No meeting | ||||||
| 2.5.2012 | Invited speaker: Judith Berman | Computing Candida chromosomes | |||||
| 9.5.2012 | No meeting | ||||||
| 16.5.2012 | Roye Rozov | Exploiting sparseness in de novo genome assembly | ppt | ||||
| 23.5.2012 | Yaron Orenstein | Conference report: The 8th Cold Spring Harbor winter biotechnology conference on Systems Biology | ppt | ||||
| 30.5.2012 | Ron Zeira | An iterative network partition algorithm for accurate identification of dense network modules | ppt | ||||
| 6.6.2012 | No meeting | ||||||
| 13.6.2012 | Adi Maron-Katz & David Amar | Improving biclustering solutions | ppt | ||||
| 20.6.2012 | No meeting | ||||||
| 27.06.2012 | Invited Speaker: Igor Ulitsky | Long intervening noncoding RNAs: genomics, evolution and functions in embryonic development | |||||
| 4.7.2012 | No meeting | ||||||
| 11.7.2012 | Hershel Safer | Comparative analysis of algorithms for next-generation sequencing read alignment | |||||
| Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis | ppt | ||||||
| 18.7.2012 Kaplun 324 | David Amar | A review on subclass analysis methods | ppt | Summary of the papers | A review on PCA and LDA | ||
| 25.7.2012 | No meeting | ||||||
| 1.8.2012 | No meeting | ||||||
| 8.8.2012 | Yaron Orenstein | De Bruijn meets DNA: Utilizing reverse complementarity to efficiently cover all k-mers, with application to protein binding microarrays | ppt | ||||
| 15.8.2012 | Roye Rozov | Efficient storage of high throughput DNA sequencing data using reference-based compression | |||||
| Compressing genomic sequence fragments using SlimGene. | ppt | ||||||
| 22.8.2012 | No meeting | ||||||
| 29.8.2012 | No meeting | ||||||
| Monday 3.9.2012, 11:15 Schreiber 6 | Invited Speaker: Chen-Hsiang Yeang | Computational methods of characterizing molecular aberrations on cancer genomes and optimizing treatment outcomes | |||||
| 12.9.2012 | Adi Maron-Katz | A Whole Brain fMRI Atlas Generated via Spatially Constrained Spectral Clustering | |||||
| 19.9.2012 | Dvir Netanely | Hallmarks of Cancer: The Next Generation | |||||
| The Hallmarks of Cancer | |||||||
| Hallmarks of Cancer: progress and perspectives | ppt | ||||||
| 26.9.2012 | Yom Kipur | ||||||
| 3.10.2012 | Sukot | ||||||
| 10.10.2012 | No Meeting-ISBMB | ||||||
| 17.10.2012 | Yaron Orenstein and Omer Zuqert | Mapping genomic sequences using optical reference tags | ppt | ||||
| 24.10.2012 | Didi Amar | The GENEPARK project: The 'neverending story' | ppt | ||||
| Tom Hait | PRIMA: Updating Human Promoters | ppt | |||||
| 31.10.2012 | Roye Rozov | The big squeeze: sequence compression progress | ppt | ||||
| 7.11.2012 | Didi Amar | ISOBM conference report | ppt | ||||
| 14.11.2012 | Adi Maron-Katz | fMRI data classification according to resting state functional connectivity | ppt | ||||
| 21.11.2012 | Ron Zeira | On finding cohesive subgraphs | ppt | ||||
| 28.11.2012 | Dvir Netanely Starts at 10:30 |
miRNA expression analysis | ppt | ||||
| 5.12.2012 | Rani Elkon Starts at 10:30 |
ppt | |||||
| 12.12.2012 | No meeting | ||||||
| 19.12.2012 | Rami Eitan | Estimation of rearrangement phylogeny for cancer genomes | |||||
| 26.12.2012 | No meeting |
2011 Seminars -- 2010 Seminars -- 2006 Seminars -- 2005 Seminars -- 2004 Seminars