Computational Genomics Group - Internal Seminar
Internal seminar schedule, 2011 (maintained by Didi and Gilit).Seminar is held on Wednesday at 10:30, room 309.
Schedule is tentative, please stay tuned.
Presentations are available at gaga\html\group_meeting_presentations\2011
| Date | Journal Club Speaker | Paper | Slides | Research project talk Speaker | Topic | Presentation |
| 5.1.2011 | Arnon Paz | Interactome under construction: description and comparisons of protein-protein interaction and pathway databases | ppt | Roye Rozov | Iterative resolution of multi-reads in multiple genomes | ppt |
| 12.1.2011 | Oren Tzfadia | Biological Pathway Extension Using Microarray Gene Expression Data | David Amar | Finding disease specific signatures in gene expression data | ppt | |
| 19.1.2011 | Yaron Orenstein | High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions | ppt | Guy Harari | Exhaustive Signature Algorithm | ppt |
| 25.1.2011 Tuesday, Schreiber 008 | Invited speaker: Philipp Bucher | In vivo transcription factor - target recognition: What can we learn from ChIP-Seq data ? | ||||
| 2.2.2011 | No meeting | |||||
| 9.2.2011 | No meeting | |||||
| 16.2.2011 | ISMB11 Reviews | Presented by Yaron, Annelyse, Guy K, Didi | ||||
| 23.2.2011 Schreiber 007 | Invited speaker: Esti Yeger Lotem | A network biology approach to decipher cellular response pathways | ||||
| 2.3.2011 | Ilanit 2011 reports | Presented by Adi, Arnon, Eyal, Oren, Yaron and Didi | ||||
| 9.3.2011 | Hershel Safer | A three-dimensional model of the yeast genome | ppt | Oren Tzfadia, Didi Amar | Pathways extension workflow - initial results | |
| 16.3.2011 | Invited Speaker: Israel Steinfeld | Understanding miRNA roles in breast cancer through enrichment networks | ||||
| 23.3.2011 | Renana Meller | KRANE - finding dysregulated subnetworks in cancer | ppt | Roye Rozov | Multi-genome multi-read (MGMR) progress report | ppt |
| 30.3.2011 | No meeting | |||||
| 6.4.2011 Schreiber 210 | Ron Zeira | Research project: Post-silicon tests optimizations | Adi Maron-Katz | Connected and contiguous biclustering of fMRI data | ||
| 13.4.2011 | Guy Karlebach | Yaron Orenstein | ||||
| 20.4.2011 | No meeting | |||||
| 27.4.2011 | No meeting | |||||
| 4.5.2011 | Annelyse Thevenin | Research project: Study of positions of genes to better understand driver mutations in cancer | ppt | Dorit Sagir | Using Cytoscape 3 in EXPANDER | |
| 11.5.2011 | Yaron Orenstein | AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses | Oren Tzfadia | Pathways Extension: A case study on Carotenoids biosynthesis in plants | ||
| 18.5.2011 | No Meething: Safra retreat | |||||
| 25.5.2011 | Invited Speaker: Ehud Shapiro | Uncovering the human cell lineage tree in health and disease: the next grand scientific challenge | ||||
| 1.6.2011 | Invited Speaker: Yves Moreau | Candidate gene prioritization by genomic data fusion | ||||
| 8.6.2011 | No Meeting: Shavuot | |||||
| 15.6.2011 | No Meeting | |||||
| 22.6.2011 | No Meeting | |||||
| 29.6.2011 | No Meeting | |||||
| 6.7.2011 | Roye Rozov | RNA sequencing reveals two major classes of gene expression levels in metazoan cells | ppt | Adi Maron-Katz | Using Contiguous Bi-Clustering for data driven temporal analysis of fMRI based functional connectivity | ppt |
| 13.7.2011 | Fulton Wang | Sorting by reversals, block interchanges, tandem duplications, and deletions | Ron Zeira | Post-silicon test optimization | ppt | |
| 20.7.2011 | No Meeting | |||||
| 27.7.2011 | Yaron Orenstein | Improved similarity scores for comparing motifs | ppt | Didi Amar | Differential Correlation Analysis | ppt |
| 3.8.2011 | Ron Shamir | Conference report | ppt | Guy Kerlebach | A novel technique for fast model checking - a project report | ppt |
| 10.8.2011 | Guy Banay | An introduction to revision control | ppt | Ron Zeira | DREAM6/FlowCAP2 Molecular Classification of Acute Myeloid Leukaemia Challenge | ppt |
| 17.8.2011 | Hershel Safer | Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega | ppt | Fulton Wang | Halving and guided halving problem under breakpoint distance - work in progress | ppt |
| 24.8.2011 starting 11:15 | Roye Rozov | MGMR progress report: Simulation studies | ppt | |||
| 31.8.2011 | No meeting: TAU vacation | |||||
| 7.9.2011 10:30-11:30, Schreiber 210 | Yaron Orenstein | Using position-specific prior for motif discovery | ppt | |||
| 14.9.2011 | No Meeting | |||||
| 21.9.2011 11:00-13:30, Schreiber 209 | Adi Maron-Katz | Charactarizing dynamic functional conncetivity in the resting brain using variable parameter regression and Kalma filtering approaches | ppt | Didi Amar | BMC paper review | ppt |
| 28.9.2011 | No Meeting - Rosh Hashana | |||||
| 5.10.2011 | Annelyse Thevenin | Sorting by Transpositions is Difficult | ppt | Eyal David | SPIKE work status | ppt |
| 12.10.2011 | No Meeting - Sukot | |||||
| 19.10.2011 | No Meeting - Sukot | |||||
| 26.10.2011 | No Meeting | |||||
| 2.11.2011 | No Meeting | |||||
| 9.11.2011 | No Meeting | |||||
| 16.11.2011 | Hershel Safer | Trip report on visit to Uppsala Next-Generation Sequencing Computing & Storage Resource (UPPNEX) | ppt | Adi Maron-Katz | Conference report on INFC Neuroinformatics 2011 | ppt |
| 23.11.2011 | Didi Amar | Conference report on RECOMB-DREAM 2011 | ppt | Yaron Orenstein | Conference report on RECOMB-DREAM 2011 | ppt |
| 30.11.2011 | RECOMB 2012 reviews | |||||
| 7.12.2011 11:15, Schreiber 309 | Invited speaker: Tzachi Pilpel | Aneuploidy is a Fast Evolutionary Intermediate in Adaptation to Stress | ||||
| 14.12.2011 | Ron Zeira | Conference report | ppt | Dvir Netanely | review of past projects | ppt |
| 21.12.2011 11:15, Schreiber 309 | Invited speaker: Ilan Gronau | Using Individual Human Genomes to Illuminate the Mysteries of Early Human History | ||||
| 28.12.2011 | Didi Amar | Bayesian gene set analysis for identifying significant biological pathways | ppt | Adi Maron-Katz | Compbiolib our very own source code treasure |
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