Computational Genomics Group - Internal Seminar
Internal seminar schedule, 2013 (maintained by Didi and Gilit).Seminar is held on Wednesday at 11:00, room 309.
Schedule is tentative, please stay tuned.
Presentations are available at gaga\html\group_meeting_presentations\2013
| Date | Journal Club Speaker | Title | Slides | |
| 2.1.2013 | Oded Rechavi | RNA-mediated transgenerational inheritance of acquired traits | ||
| 9.1.2013 | Yaron Orenstein | Conference report | ppt | |
| 16.1.2013 | Didi Amar | The bi-module problem: new algorithms and applications | ppt | |
| 23.1.2013 starting 10:30 | ISMB papers | |||
| 30.1.2013 | No Meeting | |||
| 6.2.2013 | Adi Maron-Katz and Didi Amar | A project talk: Exploring stress related neural markers by applying machine learning approaches on functional connectivity of resting state fMRI | ppt | |
| 13.2.2013 | No meeting | |||
| 20.2.2013 | Didi Amar | Review report | ppt | |
| 27.2.2013 | Rami Eitan | Using the nFuse method and for discovery of complex genomic rearrangements in cancer using high throughput sequencing | ||
| 6.3.2013 in Schreiber 210 | Roye Rozov | Progress report: MMGC - multi-metagenome compression | ppt | |
| 13.3.2013 Starting at 10:30 | Dorit Sagir, Ron Zeira | Dorit on: Spike-Expander new version
Ron Z. on a paper: Double Cut and Join with Insertions and Deletions |
ppt | |
| 20.3.2013 | Invited Speaker: Eitan Yaffe | Cohesin stabilizes interphase chromosomal architecture | ||
| 27.3.2013 | No meeting: Pesah | |||
| 3.4.2013 | Dvir Netaneli | A project talk: Identification of breast cancer subtypes using RNA-Seq data
with references to the paper: Comprehensive molecular portraits of human breast tumours |
ppt | |
| 10.4.2013 | No meeting | |||
| 17.4.2013 | No meeting | |||
| 24.4.2013 | Adi Maron-Katz | Using machine learning approaches to characterize major depressive disorder.
References to the following papers: Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis. By Zeng et. al. (Brain, 2012) Changes in Community Structure of Resting State Functional Connectivity in Unipolar Depression. By Lord et. al. (Plos One,2012) |
ppt | |
| 1.5.2013 | No meeting: Safra retreat | |||
| 8.5.2013 | Yaron Orenstein | Inferring binding site motifs from HT-SELEX data
Background reading |
ppt | >|
| 15.5.2013 | No meeting | |||
| 22.5.2013 | No meeting | |||
| 29.5.2013 | No meeting | |||
| 5.6.2013 | Didi Amar | Paper review: a method for disease-gene association prediction | ppt | |
| 12.6.2013 | Ron Zeira | Restricted DCJ model: rearrangement problems with chromosome reincorporation | ppt | |
| 19.6.2013 | Dvir Netanely | A project talk: Identification of breast cancer subtypes using RNA-Seq data | ppt | |
| 26.6.2013 11:15, Schreiber 006 | Safra distinguished speaker: Isaac Kohane, Harvard | Embracing Noise and Heterogeneity in Biomedical Science | ||
| 3.7.2013 | Roye Rozov | Space-efficient and exact de Bruijn graph representation based on a Bloom filter | ppt | |
| 10.7.2013 12:10, Schreiber 309 | Safra distinguished speaker: Uri Keich, USYD | Comparing sequence motifs | ||
| 17.7.2013 | Adi Maron-Katz | Disrupted Functional Brain Connectome in Individuals at Risk for Alzheimer's Disease | ppt | |
| 24.7.2013 | No meeting | |||
| 31.7.2013 | Didi Amar | Paper review report | ppt | |
| 7.8.2013 | Yaron Orenstein | ISMB 2013 conference report: Improving binding models using di-nucleotide dependencies Using complex binding models for better specificity |
ppt | |
| 14.8.2013 | Didi Amar | FAIME: a method for single sample pathway gene expression analysis. See: Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer, and also: Curation-free biomodules mechanisms in prostate cancer predict recurrent disease. |
ppt | >|
| 21.8.2013 | No meeting | |||
| 28.8.2013 | No meeting | |||
| 4.9.2013 | No meeting | |||
| 11.9.2013 | No meeting | |||
| 18.9.2013 | No meeting | |||
| 25.9.2013 | No meeting | |||
| 2.10.2013 | Yaron Orenstein | Paper presentation: "Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape" | ppt | |
| 9.10.2013 | Ron Zeria |
The MAGE conference report
Paper review: D. Doerr, A. Th?venin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC bioinformatics, vol. 13 Suppl 1, no. Suppl 19, p. S3, Dec. 2012. |
ppt | |
| 16.10.2013 at 10:00 |
Didi Amar | Project report:"Integrating expression and pathway databases for revealing disease biomarkers". | ppt | >|
| 23.10.2013 | Adi Maron-Katz | Project talk: Temporal dynamics of resting state fMRI functional connectivity | ppt | |
| 30.10.2013 | Dvir Netanely | Manuscript review | ppt | |
| 6.11.2013 in Schreiber 210 |
Roye Rozov | TRC - trace reference compression | ppt | |
| 13.11.2013 | No meeting | |||
| 20.11.2013 | Yaron Orenstein | Conference report from RECOMB Regulatory Genomics | ppt | >|
| 27.11.2013 | Rami Eitan | Reconstructing cancer genomes from paired-end sequencing data | ppt | |
| 4.12.2013 | Rachel E. Bell | Project talk: The landscape of methylations in cancers using TCGA database | ppt | >|
| 11.12.2013 | No meeting | |||
| 18.12.2013 | No Meeting | |||
| 25.12.2013 | Adi Maron-Katz | "An EEG Finger-Print of fMRI deep regional activation", by Meir-Hasson et al |
2012 Seminars -- 2011 Seminars -- 2010 Seminars -- 2006 Seminars -- 2005 Seminars -- 2004 Seminars