Computational Genomics Group - Internal Seminar
Internal seminar schedule, 2015 (maintained by Didi and Gilit).Seminar is held on Wednesday at 11:00, room 309.
Schedule is tentative, please stay tuned.
Presentations are available at gaga\html\group_meeting_presentations\2015
| Date | Journal Club Speaker | Title | Slides | |
| 7.1.2015 | Invited Speaker: Noam Kaplan | From 1D to 3D and back: Explaining and exploiting genome structure | ||
| 14.1.2015 | Idan Nurick | Topologically associated domains | ppt | |
| 21.1.2015 | Invited Speaker: Effi Kenigsberg | Studying tissue heterogeneity by measuring single-cell gene expression | ||
| 28.1.2015 | Roye Rozov | Lighter: fast and memory-efficient sequencing error correction without counting | ppt | |
| 4.2.2015 | Kobi Perl, Didi Amar | ISMB papers' reviews | ||
| 11.2.2015 | Invited speaker: Yishai Shimoni | Elucidating Compound Mechanism of Action by Network Dysregulation Analysis in Perturbed Cells | ||
| 18.2.2015 | Adi Maron-Katz | Evaluating dynamic bivariate correlations in resting-state fMRI: A comparison study and a new approach | ppt | |
| 25.2.2015 | Ron Zeira | Phylogenetic quantification of intra-tumour heterogeneity | ppt | >|
| 4.3.2015 in Schreiber 209 | Dvir Netanely | A DNA methylation-based definition of biologically distinct breast cancer subtypes | ppt | |
| 11.3.2015 starting at 10:30 | Didi Amar | A tutorial talk: Large Scale Inference | ppt | |
| 18.3.2015 | Invited Speaker: Tommy Kaplan | Chromatin dynamics during the Drosophila maternal-to-zygotic transition | ||
| 25.3.2015 | Kobi Perl | Enhancer-Promoter Pair Prediction | ppt | |
| 1.4.2015 | Rami Eitan | BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers | ppt | |
| 8.4.2015 | No meeting | |||
| 15.4.2015 | No meeting | |||
| 22.4.2015 | No meeting | |||
| 29.4.2015 | No meeting | |||
| 6.5.2015 | Maor Dan | Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering | ppt | >>|
| 13.5.2015 in 209 | Roye Rozov | Project talk: Double (and j-) checking Bloom filters to improve de novo assembly memory use and speed | ppt | |
| 20.5.2015 | No Meeting | |||
| 27.5.2015 | No Meeting | |||
| 3.6.2015 | No meeting | |||
| 10.6.2015 | No meeting | |||
| 17.6.2015 | Ron Shamir & Didi Amar | Supple algorithms and data integration for understanding diseases | ppt | |
| 24.6.2015 | Adi Maron-Katz | Data driven characterization of functional connectivity changes in fMRI profiles following sleep deprivation | ppt | >|
| 1.7.2015 | Tom Hait |
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Most of the talk will focus on the supplementary notes in: "Analysis and design of RNA sequencing experiments for identifying mRNA isoform regulation" |
ppt | |
| 8.7.2015 | Kobi Perl |
mRNA levels explain much more of the variance in protein levels than was previously thought
See also here | ppt | |
| 15.7.2015 | No meeting | |||
| 22.7.2015 | No meeting | |||
| 29.7.2015 | No meeting | |||
| 5.8.2015 | Ron Zeira | A 2-Approximation Algorithm for Sorting Signed Permutations by Reversals, Transpositions, Trans-Reversals, and Block-Interchanges | ppt | |
| 12.8.2015 in Holzbladt Hall | Roye Rozov and Gil Goldshlager | A project talk: Mink: a streaming de novo assembler for paired-end reads | ppt | |
| 19.8.2015 | Meirav Zehavi | PhD Thesis: Algorithms for Parameterized Graph Problems with Applications to Biological Network Queries | ppt | |
| 26.8.2015 | No meeting | |||
| 2.9.2015 | Didi Amar | Detecting differentially coexpressed modules during HIV-1 disease progression: A multiobjective framework | ppt | |
| 9.9.2015 | Tom Hait |
Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification
and: iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections |
ppt | |
| 16.9.2015 | Maor Dan | A project talk: "Fast non-coding RNA sequence alignment using sequence and structure information" | ppt | |
| 23.9.2015 | No meeting | |||
| 30.9.2015 | No meeting | |||
| 7.10.2015 | Ron Zeira | InPhaDel: Integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms | ppt | |
| 14.10.2015 | No meeting | |||
| 21.10.2015 | No meeting | |||
| 28.10.2015 | Dvir Netanely | A project talk: Latest results on the breast cancer project | ppt | |
| 4.11.2015 | No meeting | |||
| 11.11.2015 | No meeting | |||
| 18.11.2015 | No meeting | |||
| 25.11.2015 | Roye Rozov | A project talk: Recycler: an algorithm for detecting plasmids from de novo assembly graphs | ppt | |
| 2.12.2015 | Tom Hait | Gene expression analysis identifies global gene dosage sensitivity in cancer | ppt | |
| 9.12.2015 | Kobi Perl | A project talks: The connection between the transcriptome and proteome in non-Proliferating tissues: the inner ear as a model | ppt | |
| 16.12.2015 | Rami Eitan | A project talk: Inferring cancer karyotypes from paired-end reads and copy number variations using Integer Linear Programming | ppt | |
| 23.12.2015 | Didi Amar | Thesis talk: Novel methods for integrative analysis of heterogeneous large scale biomedical data | ppt | |
| 30.12.2015 at 10:30 | Idan Nurick | Probabilistic modeling of Hi-C contact maps |
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