Algorithms in

Algorithms in

Computational

Computational

Genomics

Genomics

at TAU

at TAU

We develop algorithms and tools for analysis of
genomic and systems biology data. Areas include:

May 2018: ATGA course translated to German

The lecture notes of Ron Shamir's course "Advanced topics in Graph Algorithms" have been translated to German. See link. This is the tenth translation of the course, following Ukranian, Indonesian, Russian, Estonian, Bulgarian, Frensh, Czech, Swedish and Spanish.

May 2018: Sorting cancer karyotypes by ILP

Read Ron Zeira's Bioinformatics paper on Sorting cancer karyotypes by DCJs, duplications and deletions using integer linear programming.

May 2018: FOCS paper published in Genome Biology

Tom Hait's new method for linking enhancers to the promoters regulated by them has been published in Genome Biology. See also the website.      

March 2018: Nimrod joins the direct PhD track

Congratulations to Nimrod Rappoport, who passed the qualifying exam for the direct PhD track! Nimrod will do his PhD research jointly with Amos Tanay's group at WIS.

March 2018: Morph-DB is published.

The Frontiers in Plant Science paper describes a resource where candidate genes for large-scale functional annotations are integrated across multiple plant species. The resource was developed by Oren Tzfadia and other colleagues and is based on our MORPH functional gene prioritization tool.

Feb 2018: ATGA course translated to Spanish

The lecture notes of Ron Shamir's course "Advanced topics in Graph Algorithms" have been translated to Spanish. See link. This is the ninth translation of the course, following Ukranian, Indonesian, Russian, Estonian, Bulgarian, Frensh, Czech and Swedish.

January 2018: Adeptus web tool published

The Adeptus web discovery and analysis tool based on expression and mutation data from many diseases was published in Bioinformatics. Adeptus was developed by Didi and Amir, and is available here.

December 2017: fMRI monitoring of anger

Read the new paper  by Adi and Talma Hendler's group on the manifestations (in resting state fMRI) of the lingering effects of anger, and their relation to traumatic stress symptoms.

December 2017: A hands-on PROMO workshop

A hands-on workshop on the PROMO tool for analyzing large genomic datasets will be given by Dvir and Neta on 21/12/17. See details here.
Ron-Shamir

Prof. Ron Shamir

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Expander

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Adeptus

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Matisse

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Morph

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Amadeus

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TWIGS

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Recycler

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All projects