Recycler: detecting plasmids from de novo assembly graphs
Recycler is a tool for extracting cyclical sequences from assembly graphs that are likely to be plasmids, phages, or other mobile elements that are physically separate from their host genomes. It can be applied on isolate, metagenome, and plasmidome graphs.
by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
See the manuscript here.
Get the software
Recycler is distributed under the BSD 3 clause license. More information is available here
. It can be downloaded at the links below.
Detailed usage information is available here
Get in touch
For questions or suggestions please contact Roye Rozov.