Recycler: detecting plasmids from de novo assembly graphs

Recycler is a tool for extracting cyclical sequences from assembly graphs that are likely to be plasmids, phages, or other mobile elements that are physically separate from their host genomes. It can be applied on isolate, metagenome, and plasmidome graphs.

by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir

See the manuscript here.


Get the software

Recycler is distributed under the BSD 3 clause license. More information is available here. It can be downloaded at the links below.

Name (link) Description
Recycler-0.6.tar.gz release 0.6 in tar format
Recycler-0.6.zip release 0.6 as a zip file

Usage

Detailed usage information is available here.

Get in touch

For questions or suggestions please contact Roye Rozov.