A B C D E F G H I K L M O P R S T U V W _

D

data - Variable in class main_scripts.TscoresCalculator

DC_graph - Variable in class graph_algorithms.MetaModuleFinder

DCGraphsCalculator - Class in main_scripts

DCGraphsCalculator(TscoresCalculator, int) - Constructor for class main_scripts.DCGraphsCalculator

deepClone() - Method in class math_utils.ExpressionMatrix

determineFDRThrIndependenceAssumption(double) - Method in class scripts.HyperGeometricEnrichmentAnalysis

dGGraph - Variable in class main_scripts.DCGraphsCalculator

dGGraph - Variable in class main_scripts.DICER_main

DICER_main - Class in main_scripts

This class runs the DICER algorithm and outputs the analysis results

DICER_main(String[]) - Constructor for class main_scripts.DICER_main

The format of the input should be (in this order): 1.

DICER_main(String, String, int, String) - Constructor for class main_scripts.DICER_main

DICER_main(ExpressionMatrix, String, int) - Constructor for class main_scripts.DICER_main

DifferentialClusteringSolutionSignificanceEstimator - Class in scripts

This scripts evaluates the significance of the differential correlation within and between modules in a given solution

DifferentialClusteringSolutionSignificanceEstimator() - Constructor for class scripts.DifferentialClusteringSolutionSignificanceEstimator

DifferentialCorrelationOfClusteringAnalyzer - Class in scripts

This script is for evaluating a clustering solution.

DifferentialCorrelationOfClusteringAnalyzer() - Constructor for class scripts.DifferentialCorrelationOfClusteringAnalyzer

doHierarchicalClustering(double, double[][], int) - Static method in class graph_algorithms.HierarchicalClusterer

doMerges() - Method in class graph_algorithms.MetaModulesMerger

doMerges(double, double) - Method in class graph_algorithms.SingletonsAndMetaModulesMerger

doStatisticalAnalysis() - Method in class main_scripts.DCGraphsCalculator

doStatisticalAnalysis() - Method in class main_scripts.DICER_main

This method performs statistical operations: 1.

downClusterer - Variable in class main_scripts.DICER_main

downCorrelatedClusters - Variable in class main_scripts.DICER_main

downMetaModulesFinder - Variable in class main_scripts.DICER_main