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pearsonCorrelation(float[], float[]) - Static method in class math_utils.staticMathHelperMethods

pearsonCorrelation(float[], float[], int, int) - Static method in class math_utils.staticMathHelperMethods

pearsonCorrelation(float[], float[], float, float, float, float) - Static method in class math_utils.staticMathHelperMethods

pearsonCorrelation(float[], float[], float, float, float, float, int, int) - Static method in class math_utils.staticMathHelperMethods

PercentileCalc - Class in math_utils

PercentileCalc() - Constructor for class math_utils.PercentileCalc

powApprox(double, double) - Static method in class math_utils.MathUtils

An efficient version of the power function, approximates the value of pow(a,b).

printAnalysisResults() - Method in class main_scripts.DICER_main

This method prints DICER flow results.

printClusters(LinkedList<HashSet<Integer>>, String, ArrayList<String>, BufferedWriter) - Static method in class main_scripts.DICER_main

printGenes() - Method in class scripts.HyperGeometricEnrichmentAnalysis

printMatrix(double[][], String) - Static method in class main_scripts.DICER_main

printMatrix() - Method in class math_utils.ExpressionMatrix

printMatrix(BufferedWriter) - Method in class math_utils.ExpressionMatrix

printMatrix() - Method in class math_utils.SimilarityMatrix

printMatrix(float[][]) - Static method in class math_utils.staticMathHelperMethods

printMetaClusters(String, BufferedWriter, MetaModuleFinder, Hashtable<String, HashSet<String>>) - Static method in class main_scripts.DICER_main

printMetaGraph(MetaModuleFinder, MetaModuleFinder, BufferedWriter, BufferedWriter) - Static method in class main_scripts.DICER_main

printModules(MetaModuleFinder, String, BufferedWriter, int, Hashtable<String, HashSet<String>>) - Static method in class main_scripts.DICER_main

printResults(double) - Method in class scripts.HyperGeometricEnrichmentAnalysis

printResultsStatistics(double) - Method in class scripts.HyperGeometricEnrichmentAnalysis

printResultsStatisticsRemoveDuplications(double) - Method in class scripts.HyperGeometricEnrichmentAnalysis

printStatisticalAnalysisMatrices(String) - Method in class main_scripts.DICER_main

printWekaCSVForRegression(String) - Method in class math_utils.ExpressionMatrix

printWekaCSVInstancesArePatients(String, int[], int) - Method in class math_utils.ExpressionMatrix

WEKA receives tab separated files, the header contains the features names and each line is an instance.

printWekaCSVInstancesArePatients(String, int[], String[]) - Method in class math_utils.ExpressionMatrix