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| Class Summary | |
|---|---|
| ByClassesStandardizer | This script receives as input an expression matrix and separation of the conditions to classes and writes a new matrix in which every class is standardized separately. |
| CalcDICERStability | This script calculates DICER's stability. |
| CorrelationsSampler | This script receives as input an expression matrix file, a sample size, and two more optional parameters: from, to. |
| DifferentialClusteringSolutionSignificanceEstimator | This scripts evaluates the significance of the differential correlation within and between modules in a given solution |
| DifferentialCorrelationOfClusteringAnalyzer | This script is for evaluating a clustering solution. |
| GenerateWeightedGraphForCytoscape | This script is for creating sif files for analysis in cytoscape. |
| GetMaximumValueInSimMatrix | |
| GetMetaGraphFromSol | This script calculates the "meta-file" of a clustering solution. |
| HyperGeometricEnrichmentAnalysis | |
| ManyEnrichmentTests | |
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