Hierarchy For All Packages

Package Hierarchies:

EM_LLR_Utils, graph_algorithms, main_scripts, math_utils, scripts

Class Hierarchy

• java.lang.Object
  • EM_LLR_Utils.AbstractParamsEM
    • EM_LLR_Utils.RegParamsEM
  • scripts.ByClassesStandardizer
  • scripts.CalcDICERStability
  • graph_algorithms.ComparableEdge (implements java.lang.Comparable<T>)
  • scripts.CorrelationsSampler
  • main_scripts.DCGraphsCalculator
  • main_scripts.DICER_main
  • scripts.DifferentialClusteringSolutionSignificanceEstimator
  • scripts.DifferentialCorrelationOfClusteringAnalyzer
  • math_utils.ExpressionMatrix
  • scripts.GenerateWeightedGraphForCytoscape
  • scripts.GetMaximumValueInSimMatrix
  • scripts.GetMetaGraphFromSol
  • math_utils.HelperFuncs
  • graph_algorithms.HierarchicalClusterer
  • scripts.HyperGeometricEnrichmentAnalysis
  • EM_LLR_Utils.LLRScoresCalculator
  • scripts.ManyEnrichmentTests
  • math_utils.MathUtils
  • graph_algorithms.MetaModule (implements java.lang.Comparable<T>)
  • graph_algorithms.MetaModuleFinder
  • graph_algorithms.MetaModulePairMerger
  • graph_algorithms.MetaModulesMerger
  • math_utils.PercentileCalc
  • EM_LLR_Utils.SeedGenerator<T>
  • math_utils.SimilarityMatrix
  • graph_algorithms.SingletonsAndMetaModulesMerger
  • math_utils.staticMathHelperMethods
  • main_scripts.TscoresCalculator

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • EM_LLR_Utils.SeedGenerator.SeedConfinement
    • EM_LLR_Utils.SeedGenerator.SeedScore
    • EM_LLR_Utils.SeedGenerator.BestNeiSelection