AbstractParamsEM
ByClassesStandardizer
CalcDICERStability
ComparableEdge
CorrelationsSampler
DCGraphsCalculator
DICER_main
DifferentialClusteringSolutionSignificanceEstimator
DifferentialCorrelationOfClusteringAnalyzer
ExpressionMatrix
GenerateWeightedGraphForCytoscape
GetMaximumValueInSimMatrix
GetMetaGraphFromSol
HelperFuncs
HierarchicalClusterer
HyperGeometricEnrichmentAnalysis
LLRScoresCalculator
ManyEnrichmentTests
MathUtils
MetaModule
MetaModuleFinder
MetaModulePairMerger
MetaModulesMerger
PercentileCalc
RegParamsEM
SeedGenerator
SeedGenerator.BestNeiSelection
SeedGenerator.SeedConfinement
SeedGenerator.SeedScore
SimilarityMatrix
SingletonsAndMetaModulesMerger
staticMathHelperMethods
TscoresCalculator
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