main_scripts
Class TscoresCalculator

java.lang.Object
  main_scripts.TscoresCalculator

public class TscoresCalculator
extends java.lang.Object

This class calculated the T-scores. T-score is the measure of the normalized correlation difference of a gene-pair (where the normalization is perform vis-a-vis all other differences).

Field Summary

java.util.Map<java.lang.Integer,float[][]>	class2Correlations
ExpressionMatrix	data
float[][]	scoredTscoresGraph

Constructor Summary

TscoresCalculator(ExpressionMatrix data, int[] borders, java.lang.String[] names, java.lang.String type)

TscoresCalculator(ExpressionMatrix data, java.lang.String cP, java.lang.String type)

TscoresCalculator(java.lang.String GEDataFilePath, java.lang.String ClassesFilePath, java.lang.String type)

Method Summary

void	claculateSimilarities()
int[]	getClassesBorders()
void	setGlobalGraphForOneClass(int classIndex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

data

public ExpressionMatrix data

class2Correlations

public java.util.Map<java.lang.Integer,float[][]> class2Correlations

scoredTscoresGraph

public float[][] scoredTscoresGraph

Constructor Detail

TscoresCalculator

public TscoresCalculator(java.lang.String GEDataFilePath,
                         java.lang.String ClassesFilePath,
                         java.lang.String type)

TscoresCalculator

public TscoresCalculator(ExpressionMatrix data,
                         int[] borders,
                         java.lang.String[] names,
                         java.lang.String type)

TscoresCalculator

public TscoresCalculator(ExpressionMatrix data,
                         java.lang.String cP,
                         java.lang.String type)

Method Detail

claculateSimilarities

public void claculateSimilarities()

setGlobalGraphForOneClass

public void setGlobalGraphForOneClass(int classIndex)

getClassesBorders

public int[] getClassesBorders()