Lab news

Read the paper by Omer, Dan Coster, Maya and our clinical colleagues on early prediction of deterioration in hospitalized COVID-19 patients using machine learning.

Read the Bioinformatics note by Hagai and Nima describing the Domino active module discovery server.

Read Tom Hait’s paper in Nucleic Acids Research on discovering cell-type specific promoter-enhancer links across hundreds of cell types.

Read the preprint of David Pellow and Abhinav Dutta broadening the theory of syncmer and applying it to improve the long read mappers minimap and winnowmap.

Congratulations to Yael Ben-Ari, who completed her MSc degree! Yael’s thesis “Improving the efficiency of de Bruijn graph construction using compact universal hitting sets” is available here.

Read Dan Flomin and David’s new preprint on using adaptive minimizer order to cut the memory size of Gerbil k-mer counter by 30-50%.

A new online service enabling network-based active module discovery is now operational. The server, developed by Hagai and Nima, applies the DOMINO algorithm. See the manuscript.

Lianrong’s manuscript describing a classifier of metagenomic contigs into viral, plasmidic and bacterial is now available in BioRxiv.

Nimrod Rappoport won an excellence award from the Herczeg Institute on Aging for an outstanding doctoral research proposal in the field of aging. Congrats Nimrod!

We welcome Ron Saad who is joining the group as a Master student. Ron has a BSc from the Technion and is completing his service in the IDF.