Expander Online Documentation

Table of Contents

Introduction. 2

Starting EXPANDER.. 3

Input Data. 4

Preprocessing GE Data: 9

Viewing Data Plots. 13

Clustering GE Data: 14

Biclustering GE Data. 17

Group analysis tools. 21

Matrix visualizations. 30

Hierarchical clustering and visualization. 32

PCA transformation. 34

Additional options. 35

File Formats. 36

Sample input files. 38

Supplied Files. 39

Settings. 43

FAQ.. 44

Copyrights information. 47

References. 48

Table of Contents

• Introduction
• Starting EXPANDER
• Input Data
• Preprocessing GE Data:
• Viewing Data Plots
• Clustering GE Data:
• Biclustering GE Data
• Group analysis tools
• Matrix visualizations
• Hierarchical clustering and visualization
• PCA transformation
• Additional options
• File Formats
• Sample input files
• Supplied Files
• Settings
• FAQ
• Copyrights information
• References