scripts
Class CorrelationsSampler

java.lang.Object
  scripts.CorrelationsSampler

public class CorrelationsSampler
extends java.lang.Object

This script receives as input an expression matrix file, a sample size, and two more optional parameters: from, to. The script sample gene pairs and calculates their correlation. The size of the sample is the second parameter. If from,to are given then the correlations are calculated using only the sample in the from-to window. Expression matrix format: tab delimited file. Rows are genes\probes, columns are samples. First row\column is the row\column name.

Constructor Summary

CorrelationsSampler()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CorrelationsSampler

public CorrelationsSampler()

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args -