Uses of Class
main_scripts.TscoresCalculator

Packages that use TscoresCalculator

main_scripts
scripts

Uses of TscoresCalculator in main_scripts

Fields in main_scripts declared as TscoresCalculator

protected TscoresCalculator	DICER_main.tScoresCalc
protected TscoresCalculator	DCGraphsCalculator.tScoresCalc

Constructors in main_scripts with parameters of type TscoresCalculator

DCGraphsCalculator(TscoresCalculator t, int classI)

Uses of TscoresCalculator in scripts

Methods in scripts with parameters of type TscoresCalculator

static void	DifferentialClusteringSolutionSignificanceEstimator.calculateDiffStatistics(TscoresCalculator sims, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> geneSets)
static void	DifferentialClusteringSolutionSignificanceEstimator.calculateDiffStatistics(TscoresCalculator sims, java.util.LinkedList<java.util.LinkedList<java.lang.String>> geneSets)
static void	DifferentialClusteringSolutionSignificanceEstimator.calculateDiffStatisticsForPairs(TscoresCalculator sims, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> geneSets) This method go over all set pairs and calculate the fold change against average of random modules.
static void	DifferentialClusteringSolutionSignificanceEstimator.calculateDiffStatisticsForPairsForOurAlgo(TscoresCalculator sims, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> geneSets)
static java.util.ArrayList<java.lang.Integer>	DifferentialClusteringSolutionSignificanceEstimator.getSetAsArrayList(TscoresCalculator sims, java.util.Collection<java.lang.String> geneSet)
static float	DifferentialClusteringSolutionSignificanceEstimator.getSumOfScores(TscoresCalculator sims, java.util.Collection<java.lang.String> geneSet)
static float	DifferentialClusteringSolutionSignificanceEstimator.getSumOfScores(TscoresCalculator sims, java.util.HashSet<java.lang.String> geneSet, java.util.HashSet<java.lang.String> geneSet2, boolean print)