Uses of Class
math_utils.ExpressionMatrix

Packages that use ExpressionMatrix

main_scripts
math_utils

Uses of ExpressionMatrix in main_scripts

Fields in main_scripts declared as ExpressionMatrix

ExpressionMatrix

TscoresCalculator.data

Constructors in main_scripts with parameters of type ExpressionMatrix

DICER_main(ExpressionMatrix mat, java.lang.String cP, int cla)

TscoresCalculator(ExpressionMatrix data, int[] borders, java.lang.String[] names, java.lang.String type)

TscoresCalculator(ExpressionMatrix data, java.lang.String cP, java.lang.String type)

Uses of ExpressionMatrix in math_utils

Methods in math_utils that return ExpressionMatrix

ExpressionMatrix	ExpressionMatrix.deepClone()
ExpressionMatrix	ExpressionMatrix.getExpandedByGraph(short[][] graph)
ExpressionMatrix	ExpressionMatrix.getShuffeledMatrixByColumns(java.util.Random rand)
ExpressionMatrix	ExpressionMatrix.getSubMatrixByColumnsIndices(java.util.ArrayList<java.lang.Integer> list) This method receives a sorted list of indices and returns a sub-matrix that contains only the columns that are included in the list
ExpressionMatrix	ExpressionMatrix.getSubMatrixByRowsIndices(java.util.LinkedList<java.lang.Integer> list) This method returns a sub-matrix with all the raws that appear in the list.
ExpressionMatrix	ExpressionMatrix.matrixByClusteringResults(java.util.LinkedList<java.util.LinkedList<java.lang.Integer>> clusteringResult) unite clusters into median pattern
ExpressionMatrix	ExpressionMatrix.removeGenes(java.util.LinkedList<java.lang.Integer> toRemove)

Methods in math_utils with parameters of type ExpressionMatrix

void	ExpressionMatrix.addRowsToMatrix(ExpressionMatrix other)