Welcome to CT-FOCS, a resource for cell type-specific enhancer-promoter links based on large-scale high-throughput data
This website contains:
- More than 229,000 human cross-validated cell type-specific enhancer-promoter (EP) links spanning ~14k human genes and ~42k putative enhancers.
- R code (and data) for performing cell type-specific EP network inference given enhancer/promoter activity patterns, genomic locations, and a unique sample to cell type map.
- R code (and data) for integrative analysis of type-specific EP links with ChIA-PET interactions.
- R code (and data) for integrative analysis of type-specific gene expression and regulation from inferred EP links.
Link to FOCS website - global EP links
In case of any questions or suggestions please feel free to contact Tom Hait by email: tomhait AT mail dot tau dot ac dot il
Alernatively, feel free to post on CT-FOCS forum