Uses of Class
graph_algorithms.MetaModuleFinder

Packages that use MetaModuleFinder

graph_algorithms
main_scripts

Uses of MetaModuleFinder in graph_algorithms

Methods in graph_algorithms with parameters of type MetaModuleFinder

static double	MetaModulePairMerger.getBetweenAvgDCScores(java.util.HashSet<java.lang.Integer> a, java.util.HashSet<java.lang.Integer> b, MetaModuleFinder data)
static double	MetaModulePairMerger.getBetweenAvgGCScores(java.util.HashSet<java.lang.Integer> a, java.util.HashSet<java.lang.Integer> b, MetaModuleFinder data)
static double	MetaModulePairMerger.getBetweenDCScores(java.util.HashSet<java.lang.Integer> a, java.util.HashSet<java.lang.Integer> b, MetaModuleFinder data)
static double	MetaModulePairMerger.getBetweenGCScores(java.util.HashSet<java.lang.Integer> a, java.util.HashSet<java.lang.Integer> b, MetaModuleFinder data) A set of auxiliary static methods
MetaModule	MetaModulePairMerger.mergeLists(java.util.HashSet<java.lang.Integer> u1, java.util.HashSet<java.lang.Integer> u2, java.util.HashSet<java.lang.Integer> v1, java.util.HashSet<java.lang.Integer> v2, MetaModuleFinder data)

Constructors in graph_algorithms with parameters of type MetaModuleFinder

MetaModule(java.util.HashSet<java.lang.Integer> u, java.util.HashSet<java.lang.Integer> v, MetaModuleFinder data)

SingletonsAndMetaModulesMerger(java.util.Collection<MetaModule> a, java.util.ArrayList<java.lang.Integer> sigs, MetaModuleFinder d)

Uses of MetaModuleFinder in main_scripts

Fields in main_scripts declared as MetaModuleFinder

protected MetaModuleFinder	DICER_main.downClusterer
protected MetaModuleFinder	DICER_main.downMetaModulesFinder
protected MetaModuleFinder	DICER_main.upClusterer
protected MetaModuleFinder	DICER_main.upMetaModulesFinder

Methods in main_scripts that return MetaModuleFinder

MetaModuleFinder

DICER_main.getDownClusterer()

Methods in main_scripts with parameters of type MetaModuleFinder

protected static void	DICER_main.getMetaModules(java.lang.String type, MetaModuleFinder clusterer, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> mms)
protected static void	DICER_main.getModules(MetaModuleFinder clust, java.lang.String type, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> seeds)
protected static void	DICER_main.printMetaClusters(java.lang.String type, java.io.BufferedWriter writer, MetaModuleFinder clusterer, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> mms)
protected static void	DICER_main.printMetaGraph(MetaModuleFinder clustererUp, MetaModuleFinder clustererDown, java.io.BufferedWriter writer1, java.io.BufferedWriter writer2)
protected static void	DICER_main.printModules(MetaModuleFinder clust, java.lang.String type, java.io.BufferedWriter writer, int minSize, java.util.Hashtable<java.lang.String,java.util.HashSet<java.lang.String>> seeds)