Module number 989




Database revision : gnsdb28.10
Date : Tue Feb 25 17:21:12 2003
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Cond796:Ca5'\n Cond826:tlc1_Expt.1_Passage_7\n Cond912:(99i1)_S150-2B_YPGL_NormInt\n Cond399:Nitrogen_Depletion_8_h\n Cond798:Ca30'\n Cond104:npr2\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond13:ase1(**12)\n Cond675:MHY1_(dun1)_+_heat_20_min\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond400:Nitrogen_Depletion_12_h\n Cond834:tlc1_Expt.2_Passage_6\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond416:YPD_10_h__ypd-2\n Cond810:Na45'\n Cond289:Cycloheximide\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond890:G1\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond318:37C_to_25C_shock_-_60_min\n Cond673:DES460_(wild_type)_+_heat_20_min\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond312:Heat_Shock_015_minutes_hs-2\n Cond683:MHY1_(crt1)_vs._CRY1_(wild_type)_-_log_phase\n Cond915:(99i4)_HBY4_YPGL_NormInt\n Cond490:PHO81c_vs_WT_exp2_\n Cond71:gln3\n Cond825:tlc1_Expt.1_Passage_6\n mYNL274C:Unknown ,, Unknown\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond143:rrp6\n Cond662:mec1_plus_gamma_5_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond653:wt_plus_gamma_30_min\n Cond314:Heat_Shock_060_minutes__hs-2\n Cond833:tlc1_Expt.2_Passage_5\n Cond370:1.5_mM_diamide_(10_min)\n Cond634:DES460_+_0.02%_MMS_-_15_min\n mNTH1:hydrolyzes trehalose; may be inolved in growth transition fr\nom glucose to glycerol; shows significant sequence similarit\ny to Nth2p,neutral trehalase,Null mutant is viable\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond813:Na+FK30'\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n Cond303:Heat_Shock_20_minutes_hs-1\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond343:constant_0.32_mM_H2O2_(120_min)_redo\n Cond564:alpha91\n Cond408:diauxic_shift_timecourse_13.5_h\n Cond11:arg5,6\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond801:CaFK15'\n Cond332:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_5_minutes\n Cond455:YP_galactose_vs_reference_pool_car-2\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond316:37C_to_25C_shock_-_30_min\n Cond301:Heat_Shock_10_minutes_hs-1\n Cond982:pho85D_10_mM_1NaPP1_\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond824:tlc1_Expt.1_Passage_5\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n mLAP4:vacuolar aminopeptidase ysc1,vacuolar aminopeptidase ysc1,Le\nucine aminopeptidase deficient\n Cond224:CMD1(tetpromoter)\n Cond800:CaFK5'\n Cond190:vps8\n Y-Stre.msn2/4acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond745: Cond2:ade2(haploid)\n Cond371:1.5_mM_diamide_(20_min)\n Cond377:1M_sorbitol_-_5_min\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond651:wt_plus_gamma_10_min\n Cond872:Zero1\n Cond808:Na15'\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond326:29C_to_33C_-_15_minutes\n Cond855:pm38-30\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond857:pm38-gtoe\n Cond387:Hypo-osmotic_shock_-_45_min\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond317:37C_to_25C_shock_-_45_min\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond419:YPD_2_d_ypd-2\n Cond278:CDC42(tetpromoter)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n mALD2:Expression induced in response to high osmotic stress. NAD+ \nis preferred coenzyme.,aldeyhde dehydrogenase,ald2 ald3 doub\nle mutants show reduced growth rate with ethanol as the sole\n carbon source.\n mYMR090W:Unknown ,, Unknown\n Cond838:expt1\n Cond886:g-ray\n Cond823:tlc1_Expt.1_Passage_4\n Cond811:Na60'\n Cond372:1.5_mM_diamide_(30_min)\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond324:heat_shock_33_to_37,_20_minutes\n mTPS2:Trehalose-6-phosphate phosphatase,trehalose-6-phosphate phos\nphatase,Null mutant is viable, exhibits complete loss of tre\nhalose-6-phosphate phosphatase activity, measured in vitro, \nand accumulation of excessive amounts of trehalose-6-phospha\nte instead of trehalose upon heat shock or entrance into sta\ntionary phase in vivo; null mutant is temperature sensitive,\n tps2 (pfk3) pfk1 double mutants are glucose negative\n Cond334:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_30_minutes\n Cond380:1M_sorbitol_-_45_min_\n mEMI2:Unknown ,, Unknown\n Cond831:tlc1_Expt.2_Passage_3\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond815:Na+FK60'\n mGPD1:glycerol-3-phosphate dehydrogenase,glycerol-3-phosphate dehy\ndrogenase,lethal under conditions of osmotic stress, unable \nto grow on glycerol\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cond383:1M_sorbitol_-_120_min\n Cond274:yor080w(**3)\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond980:F82G_10_mM_1NaPP1\n Cond307:Heat_Shock_80_minutes_hs-1\n Cond979:WT_10_mM_1NaPP1\n Cond304:Heat_Shock_30_minutes_hs-1\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond703:gal10-gal\n Cond330:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_15_minutes\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond663:mec1_plus_gamma_10_min\n Cond217:yer050c\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond141:rps24a(haploid)\n Cond388:Hypo-osmotic_shock_-_60_min\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Cond4:afg3(haploid)\n Cond185:ubr2\n Cond352:1_mM_Menadione_(120_min)redo\n Cond315:37C_to_25C_shock_-_15_min\n mCVT19:Cytoplasm to Vacuole Targeting; Mutant is defective in impor\nt of aminopeptidase I through the cytoplasm to vacuole targe\nting pathway,Receptor for biosynthetic cytoplasm to vacuole \ntargeting,Null: viable, unable to target vacuolar aminopepti\ndase I and to vacuoles, both under growing and nitrogen star\nvation conditions.\n Cond976:F82G_1_mM_1NaPP1\n Cond674:DES459_(mec1)_+_heat_20_min\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond911:(83i5)_S150-2B_YPD_NormInt\n Cond364:dtt_030_min__dtt-2\n Cond373:1.5_mM_diamide_(40_min)\n Cond822:tlc1_Expt.1_Passage_3\n Cond445:Msn4_overexpression\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond142:rps27b(**11)\n Cond802:CaFK30'\n Cond300:Heat_Shock_05_minutes_hs-1\n Cond814:Na+FK45'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond769:Acid_80'\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond245:ymr014w\n Cond395:Nitrogen_Depletion_30_min.\n Cond793:Sorbitol_90'\n mUSV1:Up in StarVation,,\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond797:Ca15'\n Cond361:2.5mM_DTT_180_min_dtt-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond367:dtt_240_min_dtt-2\n Cond313:Heat_Shock_030inutes__hs-2\n Cond187:vac8\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond818:crz1/Na30'\n Cond378:1M_sorbitol_-_15_min\n Cond170:ste20(**11)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond874:30min\n Cond27:ckb2\n Cond374:1.5_mM_diamide_(50_min)\n Cond809:Na30'\n Cond325:29C_to_33C_-_5_minutes\n Cond282:IDI1(tetpromoter)\n Cond859:ms221-30\n Cond366:dtt_120_min_dtt-2\n mYJL163C:Unknown ,, Unknown\n Cond828:tlc1_Expt.1_Passage_9\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond650:wt_plus_gamma_5_min\n Cond160:sir4\n Cond837:tlc1_Expt.2_Passage_9__\n Cond652:wt_plus_gamma_20_min\n Cond464:37_deg_growth_ct-1\n Cond836:tlc1_Expt.2_Passage_8\n Cond907:(83i1)_S150-2B_YPGL_NormInt\n Cond448:galactose_vs._reference_pool_car-1\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond658:DES460_(wt)_-_mock_irradiation_-_5_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond369:1.5_mM_diamide_(5_min)\n Cond552:alpha7\n mPGM2:Phosphoglucomutase,phosphoglucomutase,Null mutant is viable,\n pgm1 pgm2 deletion mutants fail to grow on galactose\n Cond670:DES459_(mec1)_-_mock_irradiation_-_5_min\n Cond363:dtt_015_min_dtt-2\n Cond389:steady-state_1M_sorbitol\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond386:Hypo-osmotic_shock_-_30_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond323:heat_shock_29_to_37,_20_minutes\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond344:constant_0.32_mM_H2O2_(160_min)_redo\n Cond759:Heat_0'_(B)\n Cond346:1_mM_Menadione_(20_min)_redo\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond820:tlc1_Expt.1_Passage_1\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond341:constant_0.32_mM_H2O2_(80_min)_redo\n Cond827:tlc1_Expt.1_Passage_8\n Cond893:SMMS\n Cond340:constant_0.32_mM_H2O2_(60_min)_redo\n Cond379:1M_sorbitol_-_30_min\n mYDL023C:Unknown ,, Unknown\n Cond151:sbp1\n Cond444:Msn2_overexpression_(repeat)\n Cond758:Heat_0'_(A)\n Cond273:yor078w\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond434:DBY7286_37degree_heat_-_20_min\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond871:yhe710-ss\n Cond478:WT+/-10mM3AT(R491)\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond144:rtg1\n Cond762:Heat_45'\n Cond333:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_15_minutes\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n Cond877:MMS\n Cond417:YPD_12_h_ypd-2\n mTPK1:putative catalytic subunit of cAMP-dependent protein kinase,\ncAMP-dependent protein kinase catalytic subunit (putative),m\nulticopy suppression of ras mutant\n Cond946:W303ume6_YPD\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Y-Stre.Sorbitol:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond779:msn2/4_acid_20'\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond319:37C_to_25C_shock_-_90_min\n mYPL004C:Unknown ,, Unknown\n Cond876:zero2\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond283:KAR2(tetpromoter)\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond360:2.5mM_DTT_120_min_dtt-1\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond348:1mM_Menadione_(40_min)_redo\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond339:constant_0.32_mM_H2O2_(50_min)_redo\n Cond133:rpd3(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond858:pm71-30\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n mLAP4 mCVT19
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Computational Genomics Lab, Tel-Aviv uniresity