Module number 833




Database revision : gnsdb28.10
Date : Tue Feb 25 17:07:25 2003
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mYDL199C:Unknown ,, Unknown\n Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n mYNR071C:Unknown ,, Unknown\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n mYPR015C:Unknown ,, Unknown\n Cond163:ssn6(haploid)\n Cond698:gal3-gal\n mSDH2:Succinate dehydrogenase (ubiquinone) iron-sulfur protein sub\nunit,succinate dehydrogenase (ubiquinone) iron-sulfur protei\nn subunit,Null mutant is viable\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond302:Heat_Shock_15_minutes_hs-1\n mYPL280W:Unknown ,, Unknown\n Cond418:YPD_1_d_ypd-2\n mYHL021C:Unknown ,, Unknown\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond730:hda1\n Cond834:tlc1_Expt.2_Passage_6\n Cond697:gal2-gal\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond467:steady_state_21_dec_C_ct-2\n Cond416:YPD_10_h__ypd-2\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Cond911:(83i5)_S150-2B_YPD_NormInt\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond364:dtt_030_min__dtt-2\n Cond822:tlc1_Expt.1_Passage_3\n Cond454:YP_fructose_vs_reference_pool_car-2\n mSFC1:succinate-fumarate carrier,succinate-fumarate transport prot\nein,\n mXBP1:DNA-binding transcriptional repressor,transcriptional repres\nsor,Null mutant is viable; overexpression of XBP1 leads to a\n slow-growth phenotype, lengthening of G1, an increase in ce\nll volume, and a repression of G1 cyclin expression\n mYGR052W:Unknown ,, Unknown\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond429:YPD_stationary_phase_5_d_ypd-1\n mYLR311C:Unknown ,, Unknown\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond404:Nitrogen_Depletion_5_d\n Cond452:sucrose_vs._reference_pool_car-1\n Cond693:gal7+gal\n mYJL161W:Unknown ,, Unknown\n mSGA1:intracellular sporulation-specific glucoamylase involved in \nglycogen degradation. Induced during starvation of a/a late \nin sporulation, but dispensable for sporulation,glucoamylase\n,suppression of growth arrest of cdc25\n Cond694:gal10+gal\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mCOX12:essential during assembly for full cytochrome c oxidase acti\nvity,cytochrome c oxidase subunit VIb,Null mutant is viable,\n grows poorly at room temperature, fails to grow on glycerol\n/ethanol media at 37 degrees\n mYNR073C:Unknown ,, Unknown\n Cond367:dtt_240_min_dtt-2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond825:tlc1_Expt.1_Passage_6\n Cond88:isw1,isw2\n mSNZ2:Snooze: stationary phase-induced gene family,,hypersporulati\non\n mSNZ3:Snooze: stationary phase-induced gene family,,hypersporulati\non\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond385:Hypo-osmotic_shock_-_15_min\n mYLR312C:Unknown ,, Unknown\n mJEN1:Repressed by glucose, induced by lactic acid; in high copy, \nweakly suppresses cpr3 null mutan phenotype on lactate mediu\nm at 37 degrees,carboxylic acid transporter protein homolog,\ndeletion results in slow growth of yeast in synthetic medium\n supplemented with L-lactate and synergistic with cpr3 null \nmutation; essential for lactate uptake in yeast\n Cond427:YPD_stationary_phase_2_d_ypd-1\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mYNL115C:Unknown ,, Unknown\n Cond314:Heat_Shock_060_minutes__hs-2\n Cond833:tlc1_Expt.2_Passage_5\n Cond731:hda1 \n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond206:yel044w\n mYFL051C:Unknown ,, Unknown\n mATH1:Null mutant is viable; increased tolerance to dehydration, f\nreezing, and toxic levels of ethanol,acid trehalase,Null mut\nant is viable; shows lack of vacuolar acid trehalase activit\ny\n mYGR243W:Unknown ,, Unknown\n Cond690:gal4+gal\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond970:swi1,_minimal_(c)\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n mTHI5:proposed biosynthetic enzyme involved in pyrimidine biosynth\nesis pathway above the hydroxymethyl-pyrimidine precursor le\nading to the thiaminemoiety,thiamine regulated pyrimidine pr\necursor biosynthesis enzyme,\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mREG2:Possible regulatory subunit for the PP1 family protein phosp\nhatase Glc7p,,Null mutant is viable; reg1 reg2 double mutant\ns exhibit a severe growth defect (suppressed by loss-of-func\ntion mutation in snf1); overexpression of REG2 complements s\nlow-growth defect of a reg1 mutant but not the defects in gl\nycogen accumulation or glucose repression\n mHAP4:Regulates respiratory functions; encodes divergent overlappi\nng transcripts,transcriptional activator protein of CYC1 (co\nmponent of HAP2/HAP3 heteromer),\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond824:tlc1_Expt.1_Passage_5\n Cond363:dtt_015_min_dtt-2\n mMAL11:Part of MAL1 complex locus; encodes funct. maltose permease \nin all strains, exhibits sign. seq. variability; shows homol\n. to functional maltose permease from S. carlsbergenesis; me\nmber of the 12 tm domain superfamily of sugar transporters,a\nlpha-glucoside transporter , hexose transporter , maltose pe\nrmease,Mutant is defective in maltose fermentation.\n mYBR241C:Unknown ,, Unknown\n mMAL12:Part of the complex locus MAL1; functional in S288C,maltase,\nDefective maltose fermentation\n mYMR322C:Unknown ,, Unknown\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond447:ethanol_vs._reference_pool_car-1\n mYBL064C:Unknown ,, Unknown\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond323:heat_shock_29_to_37,_20_minutes\n mYFL052W:Unknown ,, Unknown\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond457:YP_mannose_vs_reference_pool_car-2\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond344:constant_0.32_mM_H2O2_(160_min)_redo\n mYMR206W:Unknown ,, Unknown\n mGCY1:Galactose-induced transcript, product is homologous to mamma\nlian aldo/keto reductases, as well as to gamma-crystallin, a\n vertebrate eye lens protein,,Null mutant is viable\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond857:pm38-gtoe\n Cond420:YPD_3_d_ypd-2\n mPDH1:Prpd homolog (ie the propionate operon of many prokary. spec\nifically prpD); close homologs (known to be essential for pr\nopionate utilization) in prokaryotes (several of these homol\nogs are called prpD), & it is transcribed in yeast.,,\n Cond449:glucose_vs._reference_pool_car-1\n mYPR150W:Unknown ,, Unknown\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond87:isw1\n Cond450:mannose_vs._reference_pool__car-1\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond871:yhe710-ss\n Cond419:YPD_2_d_ypd-2\n Cond844:expt7\n Cond431:YPD_stationary_phase_13_d_ypd-1\n mUGA2:involved in utilization of GABA as a nitrogen source,succina\nte semialdehyde dehydrogenase,Null mutant is viable but cann\not grow with GABA as the only nitrogen source.\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond405:Diauxic_Shift_Timecourse_-_0_h\n Cond43:dot4\n Cond835:tlc1_Expt.2_Passage_7\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n mALD4:Glucose repressed. Utilizes NADP+ or NAD+ as a coenzyme equa\nlly well. (sold by SIGMA under the catalogue number A5550, a\nccording to A. Blomberg).,aldehyde dehydrogenase,\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n mYGR043C:Unknown ,, Unknown\n mSOL4:similar to SOL3,,\n Cond417:YPD_12_h_ypd-2\n mHSP30:Protein induced by heat shock, ethanol treatment, and entry \ninto stationary phase; located in plasma membrane,,\n Cond823:tlc1_Expt.1_Passage_4\n Cond403:Nitrogen_Depletion_3_d\n Cond415:YPD_8_h_ypd-2\n mMAL31:Part of the complex locus MAL3; functional in S288C; highly \nhomologous to MAL61 from S. cerevisiae, MAL61 from S. carlsb\nergenesis strains JM1901 and CB11, and MAL1T from strain 405\n9,maltose permease,Defective maltose fermentation\n Cond685:wt-gal\n Cond182:tup1(haploid)\n mMAL33:Part of complex locus MAL3; nonfunctional in S288C, shows ho\nmology to both functional & nonfunctional MAL-activator prot\neins in other Sc strains & to other nonfunctional MAL-activa\ntor sequences from S288C (i.e. MAL33, YPR196W, & YFL052W),MA\nL-activator protein,Defective maltose fermentation\n Cond402:Nitrogen_Depletion_2_d\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond401:Nitrogen_Depletion_1_d\n mPUT1:proline oxidase,proline oxidase,inability to use proline as \na nitrogen source\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond831:tlc1_Expt.2_Passage_3\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond699:gal4-gal\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond274:yor080w(**3)\n mYOR289W:Unknown ,, Unknown\n Cond421:YPD_5_d_ypd-2\n mHXT16:hexose transporter,hexose permease,\n mHSP42:Similar to HSP26; expression is regulated by stress conditio\nns,,Null mutant is viable; hsp42 hsp26 double deletion mutan\nts are viable; hsp42 null mutants subjected to moderate ther\nmal stress reorganize the actin cytoskeleton more slowly tha\nn wild-type\n mMBR1:Involved in mitochondrial biogenesis,,Null mutant is viable,\n shows defective growth on glycerol\n mMLS1:carbon-catabolite sensitive malate synthase,carbon-catabolit\ne sensitive malate synthase,Null mutant is viable\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond703:gal10-gal\n mSNZ3 mYMR322C mSNZ2
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Computational Genomics Lab, Tel-Aviv uniresity