Module number 811




Database revision : gnsdb28.10
Date : Tue Feb 25 17:04:18 2003
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Cond796:Ca5'\n Cond399:Nitrogen_Depletion_8_h\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond761:Heat_30'\n Cond913:(99i3)_S150-2B_YPD_NormInt\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond834:tlc1_Expt.2_Passage_6\n Cond185:ubr2\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond315:37C_to_25C_shock_-_15_min\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Calcin.NaNa:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond373:1.5_mM_diamide_(40_min)\n mPSE1:Functions in nuclear transport of proteins,karyopherin,Null \nmutant is viable but grows very slowly; overexpression of PS\nE1 results in enhanced protein secretion\n Cond822:tlc1_Expt.1_Passage_3\n Cond142:rps27b(**11)\n Cond300:Heat_Shock_05_minutes_hs-1\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mDPH2:Diptheria toxin resistance protein, required for diphthamide\n biosynthesis,,Null mutant is viable\n Cond480:WT+/-100mM3AT(SetA)(R491)\n mNUP120:Nucleoporin,100 kDa protein (predicted molecular weight is 1\n20 kDa) with two leucine zipper motifs, coiled-coil region, \nand some homology to Nup133p,Null mutant is viable but grows\n slower, is temperature-sensitive, and shows nucleolar fragm\nentation and clustering of nuclear pore complexes; at nonper\nmissive temperature, null mutant accumulates poly(A)+ mRNA i\nn nucleus and shows nucleolar fragmentation and spindle defe\ncts; temperature sensitivity can be suppressed by growth in \nhigh osmolarity media; synthetically lethal with nup133 and \nnup159\n Cond817:Na/Na+FK45'\n Cond395:Nitrogen_Depletion_30_min.\n Cond155:she4\n mYKL082C:Unknown ,, Unknown\n Cond553:alpha14\n Cond312:Heat_Shock_015_minutes_hs-2\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond452:sucrose_vs._reference_pool_car-1\n Cond569:cdc15_10\n mRSM22:mitochondrial ribosome small subunit component,mitochondrial\n ribosome small subunit component,Null mutant is viable, una\nble to respire\n Cond914:(99i2)_S150-2B_YPGL+G_NormInt\n Cond851:15_min\n Cond367:dtt_240_min_dtt-2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond825:tlc1_Expt.1_Passage_6\n mHCA4:putative RNA helicase,RNA helicase (putative),Null mutant is\n inviable. A Tn3 insertion into this gene causes hypersensit\nivity to the cell surface polymer perturbing agent calcofluo\nr white.\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond170:ste20(**11)\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond746: mYKR079C:Unknown ,, Unknown\n Cond374:1.5_mM_diamide_(50_min)\n Cond781:Peroxide_20'\n Cond706:gal2gal80-gal\n Cond370:1.5_mM_diamide_(10_min)\n Cond634:DES460_+_0.02%_MMS_-_15_min\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond965:ndt80_delete_mid_g/r_ratio_\n mDHR2:Unknown ,, Unknown\n Cond859:ms221-30\n Cond366:dtt_120_min_dtt-2\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Cond303:Heat_Shock_20_minutes_hs-1\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n mKRI1:KRRI-Interacting protein 1,Krr1p binding protein,\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond964:ndt80_delete_early_g/r_ratio\n Cond750: Cond856:pm38-qtop\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n mYKR015C:Unknown ,, Unknown\n Cond316:37C_to_25C_shock_-_30_min\n Cond978:pho85D_1_mM_1NaPP1_\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond982:pho85D_10_mM_1NaPP1_\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond369:1.5_mM_diamide_(5_min)\n Cond782:Peroxide_40'\n Cond800:CaFK5'\n mEBP2:EBNA1-binding protein homolog,nucleolar protein,Null mutant \nis inviable\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n mMPP10:Protein component of the U3 small nucleolar ribonucleoprotei\nn (snoRNP),U3 snoRNP protein,Null mutant is inviable\n Cond371:1.5_mM_diamide_(20_min)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond375:1.5_mM_diamide_(60_min)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond323:heat_shock_29_to_37,_20_minutes\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond808:Na15'\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond855:pm38-30\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond820:tlc1_Expt.1_Passage_1\n Cond764:Heat_120'\n Cond322:heat_shock_25_to_37,_20_minutes\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond983:WT_vs_pho85D\n Cond827:tlc1_Expt.1_Passage_8\n Cond449:glucose_vs._reference_pool_car-1\n Cond758:Heat_0'_(A)\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond273:yor078w\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n mYKL014C:Unknown ,, Unknown\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond762:Heat_45'\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond359:2.5mM_DTT_090_min_dtt-1\n mUTP4:Unknown ,, Unknown\n Cond799:Ca60'\n Cond372:1.5_mM_diamide_(30_min)\n mTIF4631:also called eIF4 (eIF-4) gamma,150 kDa subunit , Tif4632p an\nd mammalian p220 homolog , mRNA cap binding protein eIF-4F,N\null mutant is viable, grows slowly and is cold-sensitive. ti\nf4631 tif4632 double deletion mutants are inviable\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond707:gal4gal80-gal\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n mPUT3:Positive regulator of PUT (proline utilization) genes,zinc f\ninger transcription factor of the Zn(2)-Cys(6) binuclear clu\nster domain type,null is unable to use proline as sole nitro\ngen source due to deficient expression of PUT genes; mutants\n lacking C-terminal 76 codons show constitutive expression o\nf PUT genes; other mutants show non-inducible expression of \nPUT genes\n mNUP100:Participates in nucleocytoplasmic transport; member of GLFG-\ncontaining family of nucleoporins,nuclear pore complex subun\nit,Null mutant is viable with no obvious phenotypes; synthet\nically lethal with nup116 and gle2 mutants\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mMSS116:Mitochondrial RNA helicase of the DEAD box family,RNA helica\nse DEAD box,mss116 mutations affect the splicing of several \nintrons of the cytochrome B and cytochrome C oxidase subunit\n I primary transcripts\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n mFYV15:Function required for Yeast Viability on toxin exposure,,Nul\nl mutant is viable but a hHeterozygous diploid mutant exhibi\nt haploinsufficiency K1 killer toxin hypersensitivity.\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond980:F82G_10_mM_1NaPP1\n Cond858:pm71-30\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond979:WT_10_mM_1NaPP1\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n
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Computational Genomics Lab, Tel-Aviv uniresity