Module number 326




Database revision : gnsdb28.10
Date : Tue Feb 25 17:29:02 2003
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Cond72:gpa2\n Cond826:tlc1_Expt.1_Passage_7\n Cond458:YP_raffinose_vs_reference_pool_car-2\n mHAP4:Regulates respiratory functions; encodes divergent overlappi\nng transcripts,transcriptional activator protein of CYC1 (co\nmponent of HAP2/HAP3 heteromer),\n mATP7:ATP synthase d subunit,ATP synthase d subunit,glycerol minus\n phenotype; mitochondria have no detectable oligomycin-sensi\ntive ATPase activity; F1 loosely bound to the membranous por\ntion\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond836:tlc1_Expt.2_Passage_8\n mGLT1:Glutamate synthase (NADH),glutamate synthase (NADH),Null mut\nant is viable\n Cond896:STAT\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond95:mac1\n Cond13:ase1(**12)\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond487:pho80_vs_WT\n Cond824:tlc1_Expt.1_Passage_5\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond834:tlc1_Expt.2_Passage_6\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond140:rps24a(**9)\n Cond416:YPD_10_h__ypd-2\n Cond15:bim1(**15)\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond822:tlc1_Expt.1_Passage_3\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond53:erg2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond832:tlc1_Expt.2_Passage_4\n Cond426:YPD_stationary_phase_1_d_ypd-1\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mCOX4:subunit IV of cytochrome c oxidase,cytochrome c oxidase subu\nnit IV,Null mutant is viable and unable to grow on nonfermen\ntable carbon sources\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond897:STATMMS\n Cond937:t=0\n Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond472:steady_state_36_dec_C_ct-2_(repeat_hyb)\n Cond155:she4\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond827:tlc1_Expt.1_Passage_8\n Cond449:glucose_vs._reference_pool_car-1\n Cond902:(77i1)_HBY4_YPGL_NormInt\n Cond151:sbp1\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Cond452:sucrose_vs._reference_pool_car-1\n Cond807:crz1/Ca30'\n mCYC7:iso-2-cytochrome c,iso-2-cytochrome c,Null mutant is viable\n mWAR1:Unknown ,, Unknown\n mRIP1:oxidizes ubiquinol at center P in the protonmotive Q cycle m\nechanism, transferring one electron to cytochrome c1 and gen\nerating a low-potential ubisemiquinone anion which reduces t\nhe low-potential cytochrome b-566 heme group,Rieske iron-sul\nfur protein of the mitochondrial cytochrome bc1 complex,Null\n mutant is viable, unable to grow on nonfermentable carbon s\nources\n Cond804:Ca/Ca+FK15'\n mCOX13:Modulates cytochrome c oxidase activity,cytochrome c oxidase\n subunit VIa , may specifically interact with ATP,Null mutan\nt is viable, shows slightly reduced growth rate on nonfermen\ntable carbon sources\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond145:rts1\n Cond825:tlc1_Expt.1_Passage_6\n Cond278:CDC42(tetpromoter)\n Cond187:vac8\n Cond835:tlc1_Expt.2_Passage_7\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n mSCM4:Protein that suppresses ts allele of CDC4 when overexpressed\n,,viable, suppressor of cdc4ts allele\n Cond875:60min\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond413:YPD_4_h_ypd-2\n Cond80:hmg1(haploid)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond823:tlc1_Expt.1_Passage_4\n mCOX5A:One of two genes (COX5A and COX5B, both nuclear-encoded) cod\ning for subunit V of cytochrome c oxidase; COX5A gene produc\nt is the predominantform of subunit V found in holocytochrom\ne c oxidase under normal growth conditions,cytochrome c oxid\nase chain Va,Null mutant is viable, respires at 10-15% of th\ne wild-type rate due to the presence of COX5B; cox5a cox5b d\nouble deletion mutants are completely non-respiratory\n Cond415:YPD_8_h_ypd-2\n Cond874:30min\n Cond833:tlc1_Expt.2_Passage_5\n Cond27:ckb2\n Cond370:1.5_mM_diamide_(10_min)\n Cond706:gal2gal80-gal\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n Cond230:yhr022c\n Cond885:20\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond206:yel044w\n Cond737: Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n Cond570:cdc15_30\n Cond636:DES460_+_0.2%_MMS_-_45_min\n mQCR6:ubiquinol-cytochrome c oxidoreductase subunit 6 (17 kDa),ubi\nquinol cytochrome C oxidoreductase subunit 6 (17 kDa),Disrup\ntants are viable but are temperature-sensitive petite, lacki\nng ubiquinol-cytochrome c oxidoreductase activity and showin\ng loss of assembly of cytochrome bc1 complex; qcr6 is suppre\nssed by multicopy QCR9; shows synthetic interactions with qc\nr10; synthetically lethal with grc5 and qsr2\n Cond161:sod1(haploid)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond641:DES459_(mec1-)_+_0.02%_MMS_-_15_min\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mYGR182C:Unknown ,, Unknown\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
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Computational Genomics Lab, Tel-Aviv uniresity