Module number 3255




Database revision : gnsdb28.10
Date : Tue Feb 25 17:18:50 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond163:ssn6(haploid)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond221:yer083c\n Cond164:sst2(haploid)\n Cond183:ubp8\n Cond121:qcr2(haploid)\n Cond362:dtt_000_min__dtt-2\n Cond740: Cond4:afg3(haploid)\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond730:hda1\n Cond834:tlc1_Expt.2_Passage_6\n Cond657:wt_plus_gamma_120_min\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond364:dtt_030_min__dtt-2\n Cond822:tlc1_Expt.1_Passage_3\n Cond517:sst2D/wtlog10(intensity)\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond805:Ca/Ca+FK30'\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond231:yhr031c\n Cond376:1.5_mM_diamide_(90_min)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond279:ERG11(tetpromoter)\n Cond694:gal10+gal\n Cond804:Ca/Ca+FK15'\n Cond65:fus3(haploid)\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond720:t0+SSD1,H44\n Cond825:tlc1_Expt.1_Passage_6\n Cond88:isw1,isw2\n Cond422:YPD_stationary_phase_2_h_ypd-1\n Cond293:HU\n Cond963:t11.5_g/r_ratio\n Cond52:erd1\n Cond240:yml018c\n Cond945:W303_YPD\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond653:wt_plus_gamma_30_min\n Cond833:tlc1_Expt.2_Passage_5\n Cond394:aa_starv_6_h\n Cond374:1.5_mM_diamide_(50_min)\n Cond691:gal5+gal\n Cond959:t2_g/r_ratio\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond177:swi6(haploid)\n Cond206:yel044w\n Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond960:t5_g/r_ratio\n Cond970:swi1,_minimal_(c)\n Cond343:constant_0.32_mM_H2O2_(120_min)_redo\n mTHI5:proposed biosynthetic enzyme involved in pyrimidine biosynth\nesis pathway above the hydroxymethyl-pyrimidine precursor le\nading to the thiaminemoiety,thiamine regulated pyrimidine pr\necursor biosynthesis enzyme,\n Cond839:expt2\n mYPL277C:Unknown ,, Unknown\n Cond368:dtt_480_min_dtt-2\n Cond281:HMG2(tetpromoter)\n Cond896:STAT\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond89:isw2\n Cond654:wt_plus_gamma_45_min\n Cond824:tlc1_Expt.1_Passage_5\n Cond188:vma8\n Cond941:SK1_YPD\n Cond363:dtt_015_min_dtt-2\n Cond99:med2(haploid)\n Cond447:ethanol_vs._reference_pool_car-1\n Cond2:ade2(haploid)\n Cond124:rad6(haploid)\n Cond463:29_deg_growth_ct-1\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond967:swi1,_YPD_(c)\n Cond375:1.5_mM_diamide_(60_min)\n Cond656:wt_plus_gamma_90_min\n Cond943:SK1_YPA\n Cond286:YEF3(tetpromoter)\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n mYPL278C:Unknown ,, Unknown\n mYOR338W:Unknown ,, Unknown\n Cond344:constant_0.32_mM_H2O2_(160_min)_redo\n mTHI11:thiamine regulated gene, homologous to S. pombe NMT1A. Propo\nsed biosynthetic enzyme involved in pyrimidine biosynth. pat\nhway above the hydroxymethyl-pyrimidine precursor leading to\n the thiamine moiety. Three copies THI5, THI11 & THI12,thiam\nine biosynthetic enzyme,\n mTHI12:thiamine regulated gene, homologous to nmt1a in Schizosaccha\nromyces pombe; putatively involved in pyrimidine biosynthesi\ns,,\n Cond6:anp1\n Cond753: COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond961:t7_g/r_ratio\n Cond341:constant_0.32_mM_H2O2_(80_min)_redo\n mHSP26:heat shock protein 26,heat shock protein 26,Null mutant is v\niable; hsp26 hsp42 double deletion mutants are viable\n mYOR389W:Unknown ,, Unknown\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond844:expt7\n Cond625:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y12-121\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond149:sap30\n Cond17:bub1(haploid**2,10)\n Cond456:YP_glucose_vs_reference_pool_car-2\n Cond835:tlc1_Expt.2_Passage_7\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond877:MMS\n Cond132:rnr1(haploid**9)\n Cond838:expt1\n Cond806:crz1/Ca15'\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Cond823:tlc1_Expt.1_Passage_4\n Cond182:tup1(haploid)\n Cond284:PMA1(tetpromoter)\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond283:KAR2(tetpromoter)\n Cond534:tec1D+50nMaF/wt+50nMaF,30minlog10(intensity)\n Cond129:rip1\n Cond543:rst1Drst2Dtec1D/wtlog10(intensity)\n Cond538:fus3D/wtlog10(intensity)\n Cond453:YP_ethanol_vs_reference_pool_car-2\n mBNA2:Unknown ,, Unknown\n Cond299:Tunicamycin\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond161:sod1(haploid)\n Cond274:yor080w(**3)\n Cond133:rpd3(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond35:cup5\n Cond938:2h\n Cond655:wt_plus_gamma_60_min\n Cond962:t9_g/r_ratio\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond958:t0.5_g/r_ratio\n Cond939:4h\n
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Computational Genomics Lab, Tel-Aviv uniresity