Module number 3121




Database revision : gnsdb28.10
Date : Tue Feb 25 17:10:17 2003
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PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond292:Glucosamine\n Cond476:GCN4C/GCN4(R4760/R6257)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond221:yer083c\n Cond448:galactose_vs._reference_pool_car-1\n Cond944:SK1_ume6_YPA\n mTKL1:Transketolase 1,transketolase 1,Null mutant is viable; growt\nh on fermentable carbon sources, but not gluconeogenic carbo\nn sources, is reduced; tkl1 tkl2 mutants are auxotrophic for\n aromatic amino acids\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond410:diauxic_shift_timecourse_18.5_h\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond913:(99i3)_S150-2B_YPD_NormInt\n Cond280:FKS1(tetpromoter)\n Cond185:ubr2\n Cond105:nrf1\n Cond99:med2(haploid)\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond898:RPN4\n Cond843:expt6\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond81:hog1(haploid)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond53:erg2\n Cond:\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond200:yel001c\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond480:WT+/-100mM3AT(SetA)(R491)\n mACC1:acetyl-CoA carboxylase,acetyl CoA carboxylase,acc1 spores fa\nil to enter vegetative growth\n Cond897:STATMMS\n Cond894:G2\n Cond395:Nitrogen_Depletion_30_min.\n Cond704:gal80-gal\n Cond285:RHO1(tetpromoter)\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond404:Nitrogen_Depletion_5_d\n Cond893:SMMS\n Cond61:fks1(haploid)\n Cond935:10h\n Cond449:glucose_vs._reference_pool_car-1\n Cond852:30_min\n Cond452:sucrose_vs._reference_pool_car-1\n Cond693:gal7+gal\n mMAS6:23 kDa mitochondrial inner membrane protein,23 kDa mitochond\nrial inner membrane protein,Null mutant is inviable; conditi\nonal mutants accumulate mitochondrial precursor proteins at \nrestrictive temperature\n Cond914:(99i2)_S150-2B_YPGL+G_NormInt\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond287:2-deoxy-D-glucose\n Cond851:15_min\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n Cond451:raffinose_vs._reference_pool_car-1\n Cond145:rts1\n Cond895:G2MMS\n Cond879:MMC\n Cond43:dot4\n mYLR413W:Unknown ,, Unknown\n Cond481:WT+/-100mM3AT(SetB)(491)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond877:MMS\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond170:ste20(**11)\n Cond854:120_min_\n Cond256:ymr141c\n Cond886:g-ray\n Cond666:mec1_plus_gamma_45_min\n Cond26:cka2\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond661:DES460_(wt)_-_mock_irradiation_-_90_min\n Cond403:Nitrogen_Depletion_3_d\n Cond746: Cond319:37C_to_25C_shock_-_90_min\n mPAN1:Involved in actin organization and endocytosis,,Null mutant \nis inviable; conditional mutants show arrest of translation \ninitiation, alterations in mRNA poly(A) tail lengths, and al\ntered cellular location of Mod5p\n Cond284:PMA1(tetpromoter)\n Cond850:0_min\n Cond402:Nitrogen_Depletion_2_d\n mFAS1:pentafunctional enzyme consisting of the following domains :\n acetyl transferase, enoyl reductase, dehydratase and malony\nl/palmityl transferase,acetyl transferase , dehydratase , en\noyl reductase , malonyl/palmityl transferase , pentafunction\nal enzyme,Null mutant is viable\n mFAS2:Trifunctional enzyme,fatty acid synthase alpha subunit,Fatty\n acid synthetase deficient\n Cond876:zero2\n Cond885:20\n mPFK1:phosphofructokinase alpha subunit,phosphofructokinase alpha \nsubunit,Null mutant is viable, accumulates fructose-6-phosph\nate, glucose-6-phosphate, and sedoheptulose-7-phosphate, exh\nibits decreased levels of fructose-1,6-bisphosphate; pfk1 pf\nk2 double deletion mutants fail to grow on 2% glucose\n Cond942:SK1ume6_YPD\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mPFK2:phosphofructokinase beta subunit,phosphofructokinase beta su\nbunit,Null mutant is viable but exhibits slow growth and dec\nreased efficiency of glucose utilization.\n mPRY3:Pathogen Related in Sc, contains homology to the plant PR-1 \nclass of pathogen related proteins. The protein sequence is \nover 60% identical with the Pry2p & Pry3p over 145 resid. PR\nY1 is >35% identical (50% similar) to tobacco PR-1c protein.\n,,\n Cond55:erg4(haploid**7)\n Cond891:G1MMS\n Cond474:gcn4D+/-100mM3AT(KNY124)\n Cond453:YP_ethanol_vs_reference_pool_car-2\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond853:60_min\n Cond938:2h\n Cond964:ndt80_delete_early_g/r_ratio\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond884:10\n mPFK1 mPFK2
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Computational Genomics Lab, Tel-Aviv uniresity