Module number 3093




Database revision : gnsdb28.10
Date : Tue Feb 25 17:16:34 2003
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PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n mYKL153W:Unknown ,, Unknown\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond829:tlc1_Expt.2_Passage_1\n Cond121:qcr2(haploid)\n Cond13:ase1(**12)\n mPDC1:pyruvate decarboxylase,pyruvate decarboxylase,undetectable p\nyruvate decarboxylase activity in pdc1pdc5 double mutants\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond913:(99i3)_S150-2B_YPD_NormInt\n mPDC5:pyruvate decarboxylase,pyruvate decarboxylase,undetectable p\nyruvate decarboxylase activity in pdc1pdc5 double mutants\n Cond513:GAL-STE11-4,3hrs.gallog10(intensity)\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond185:ubr2\n Cond105:nrf1\n Cond204:yel028w\n mENO1:enolase I,enolase I,Null mutant is viable\n Cond467:steady_state_21_dec_C_ct-2\n Cell Cycle.ko:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n mENO2:enolase,enolase,Null mutant is inviable\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond364:dtt_030_min__dtt-2\n Cond843:expt6\n Cond822:tlc1_Expt.1_Passage_3\n Cond445:Msn4_overexpression\n Cond454:YP_fructose_vs_reference_pool_car-2\n Stress.WeakCold:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond:\n mGPM1:converts 3-phosphoglycerate to 2-phosphoglycerate in glycoly\nsis,phosphoglycerate mutase,Required for sporulation\n Cond840:expt3\n Cond814:Na+FK45'\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond966:swi1,_YPD_(a)\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond279:ERG11(tetpromoter)\n Cond830:tlc1_Expt.2_Passage_2\n Cond910:(83i4)_S150-2B_YPGL+G_NormInt\n Cond61:fks1(haploid)\n Cond852:30_min\n Cond902:(77i1)_HBY4_YPGL_NormInt\n Cond216:yer044c(haploid)\n mADH1:Alcohol dehydrogenase,alcohol dehydrogenase,Null mutant is v\niable and sensitive to formaldehyde.\n Cond356:2.5mM_DTT_030_min_dtt-1\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond569:cdc15_10\n Cond807:crz1/Ca30'\n Cond849:120_min\n Cond851:15_min\n Cond490:PHO81c_vs_WT_exp2_\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond848:90_min\n Cond901:(11i2)_HBY4_YPGL_NormInt\n Cond879:MMC\n Cond54:erg3(haploid)\n Cond572:cdc15_70\n Cond422:YPD_stationary_phase_2_h_ypd-1\n Cond963:t11.5_g/r_ratio\n Cond818:crz1/Na30'\n Cond358:2.5mM_DTT_060_min_dtt-1\n Cond52:erd1\n Cond26:cka2\n Cond9:ard1\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond328:33C_vs._30C_-_90_minutes\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond205:yel033w\n Cond687:gal1+gal\n Cond365:dtt_060_min_dtt-2\n Cond73:gyp1\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond959:t2_g/r_ratio\n Cond571:cdc15_50\n Cond282:IDI1(tetpromoter)\n Cond969:swi1,_minimal_(a)\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond975:WT_1_mM_1NaPP1\n Cond206:yel044w\n Cond366:dtt_120_min_dtt-2\n Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond828:tlc1_Expt.1_Passage_9\n Cond570:cdc15_30\n Cond960:t5_g/r_ratio\n Cond970:swi1,_minimal_(c)\n Cond584:cdc15_190\n Cond11:arg5,6\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond423:YPD_stationary_phase_4_h_ypd-1\n Cond836:tlc1_Expt.2_Passage_8\n Cond978:pho85D_1_mM_1NaPP1_\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond982:pho85D_10_mM_1NaPP1_\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond369:1.5_mM_diamide_(5_min)\n mTPI1:triosephosphate isomerase,triosephosphate isomerase,Null mut\nant is viable.\n Cond585:cdc15_200\n Cond971:swi1,_minimal_(d)_\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond140:rps24a(**9)\n Cond99:med2(haploid)\n Cond447:ethanol_vs._reference_pool_car-1\n Cond586:cdc15_210\n Cond375:1.5_mM_diamide_(60_min)\n Cond967:swi1,_YPD_(c)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond880:BCNU\n Cond53:erg2\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond808:Na15'\n Cond355:2.5mM_DTT_015_min_dtt-1\n Cond940:6h\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond820:tlc1_Expt.1_Passage_1\n Cond934:8h\n Cond285:RHO1(tetpromoter)\n Cond705:gal1gal10+gal\n Cond78:hir2\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond420:YPD_3_d_ypd-2\n Cond961:t7_g/r_ratio\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond180:top1(haploid)\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond466:steady_state_17_dec_C_ct-2\n Cond357:2.5mM_DTT_045_min_dtt-1\n Cond935:10h\n Cond229:yhr011w(**14)\n Cond271:yor051c(**14)\n mCDC19:Required for START A in the cell cycle and sporulation,pyruv\nate kinase,Null mutant is inviable. cdc19 mutants are pyruva\nte kinase deficient and show cell division cycle blocked at \n36 degrees C\n Cond354:2.5mM_DTT_005_min_dtt-1\n Cond317:37C_to_25C_shock_-_45_min\n Cond273:yor078w\n Cond350:1_mM_Menadione_(80_min)_redo\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond450:mannose_vs._reference_pool__car-1\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond465:steady_state_15_dec_C_ct-2\n Cond431:YPD_stationary_phase_13_d_ypd-1\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n mTDH1:Glyceraldehyde-3-phosphate dehydrogenase 1,glyceraldehyde-3-\nphosphate dehydrogenase 1,Null mutant is viable, tdh1 tdh2 a\nnd tdh1 tdh3 double mutants grow at wild type rates when eth\nanol is used as a carbon source\n mTDH2:glyceraldehyde 3-phosphate dehydrogenase,glyceraldehyde 3-ph\nosphate dehydrogenase,Null mutant is viable, grow poorly on \nglucose, grow as well as wild-type on ethanol media, tdh2 td\nh3 double deletion mutants are inviable\n mTDH3:Glyceraldehyde-3-phosphate dehydrogenase 3,glyceraldehyde-3-\nphosphate dehydrogenase 3,\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond841:expt4\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond359:2.5mM_DTT_090_min_dtt-1\n Cond134:rpl12a\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond256:ymr141c\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond806:crz1/Ca15'\n Cond415:YPD_8_h_ypd-2\n Cond250:ymr031w-a\n Cond284:PMA1(tetpromoter)\n Cond349:1_mM_Menadione_(50_min)redo\n Cond483:Low-Pi_vs_High-Pi_in_WT_(NBW7)_exp1\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond283:KAR2(tetpromoter)\n Cond360:2.5mM_DTT_120_min_dtt-1\n Cond974:WT_vs_F82G_2\n Cond707:gal4gal80-gal\n Cond984:pho85D_DMSO_24_hrs._vs._F82G_10_mM_1-Na_PP1_24_hrs._\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond351:1_mM_Menadione_(105_min)_redo\n Cond831:tlc1_Expt.2_Passage_3\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond815:Na+FK60'\n Cond968:swi1,_YPD_(d)\n Cond299:Tunicamycin\n Cond539:fus3Dtec1D/wtlog10(intensity)\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond421:YPD_5_d_ypd-2\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond962:t9_g/r_ratio\n Cond665:mec1_plus_gamma_30_min\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond549:clb2-2\n Cond958:t0.5_g/r_ratio\n
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Computational Genomics Lab, Tel-Aviv uniresity