Module number 29




Database revision : gnsdb28.10
Date : Tue Feb 25 17:31:47 2003
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Cond826:tlc1_Expt.1_Passage_7\n Cond796:Ca5'\n Cond912:(99i1)_S150-2B_YPGL_NormInt\n Cond399:Nitrogen_Depletion_8_h\n Cond798:Ca30'\n Cond791:Sorbitol_30'\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond675:MHY1_(dun1)_+_heat_20_min\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond362:dtt_000_min__dtt-2\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond416:YPD_10_h__ypd-2\n Cond573:cdc15_80\n Cond810:Na45'\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond890:G1\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond318:37C_to_25C_shock_-_60_min\n Cond888:MNNG_2\n Cond155:she4\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond312:Heat_Shock_015_minutes_hs-2\n Cond569:cdc15_10\n Cond914:(99i2)_S150-2B_YPGL+G_NormInt\n Cond482:WT+/-100mM3AT(SetC)(KNY164)\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mCGR1:coiled-coil growth-regulated,coiled-coil protein,Null mutant\n is inviable; CGR1 expression is down-regulated in the postd\niauxic growth phase\n Cond879:MMC\n Cond777:msn2/4_acid_0'\n Cond581:cdc15_160\n mMRD1:Multiple RNA Binding Domain; essential for synthesis of the \nsmall ribosomal subunit,,Null mutant is inviable (haploid di\nvides 2-3 times)\n Cond949:WT1val\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond662:mec1_plus_gamma_5_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond833:tlc1_Expt.2_Passage_5\n Cond370:1.5_mM_diamide_(10_min)\n Cond706:gal2gal80-gal\n mYGR272C:Unknown ,, Unknown\n Cond571:cdc15_50\n Cond634:DES460_+_0.02%_MMS_-_15_min\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond583:cdc15_180\n Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond881:4NQO\n Cond303:Heat_Shock_20_minutes_hs-1\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n mRPA34:RNA polymerase I subunit, not shared (A34.5),,Null mutant is\n viable but its RNA polymerase I lacks subunit A49 (rpa49p);\n synthetically lethal with RPA14; shows synthetic interactio\nns with DNA topoisomerase I (TPO1)\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond570:cdc15_30\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond441:DBYmsn2/4_(real_strain)_+_0.32_mM_H2O2_(20_min)\n Cond408:diauxic_shift_timecourse_13.5_h\n Cond11:arg5,6\n Cond477:GCN4/gcn4Din100mM3AT(KNY164/KNY124)\n Cond801:CaFK15'\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond316:37C_to_25C_shock_-_30_min\n Cond982:pho85D_10_mM_1NaPP1_\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond887:t-BuOOH\n Cond954:TPK2_MT2val\n TPK.TPK:The yeast A kinases differentially regulate iron uptake and \nrespiratory function. Proc Natl Acad Sci U S A. 2000 May 23\n;97(11):5984-8.\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n Cond224:CMD1(tetpromoter)\n Cond770:Acid_100'\n Cond800:CaFK5'\n Y-Stre.msn2/4acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond745: Cond586:cdc15_210\n Cond371:1.5_mM_diamide_(20_min)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n mYCK1:membrane-bound casein kinase I homolog,casein kinase I homol\nog,Null mutant is viable; yck1 yck2 double deletion mutants \nare inviable; yck1 point mutants suppress defective Snf1p ki\nnase activity in snf4 strains\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond651:wt_plus_gamma_10_min\n Cond872:Zero1\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond326:29C_to_33C_-_15_minutes\n Cond855:pm38-30\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond764:Heat_120'\n Cond857:pm38-gtoe\n Cond449:glucose_vs._reference_pool_car-1\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond317:37C_to_25C_shock_-_45_min\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond419:YPD_2_d_ypd-2\n Cond47:ecm18(**7)\n Cond278:CDC42(tetpromoter)\n Cond139:rpl8a\n mPXR1:Unknown ,, Unknown\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n Cond838:expt1\n mUTP8:Unknown ,, Unknown\n mDBP3:ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family,A\nTP dependent RNA helicase , dead/deah box protein CA3,Null m\nutant is viable\n Cond806:crz1/Ca15'\n Cond811:Na60'\n Cond372:1.5_mM_diamide_(30_min)\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n Cond324:heat_shock_33_to_37,_20_minutes\n Cond334:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_30_minutes\n Cond55:erg4(haploid**7)\n Cond831:tlc1_Expt.2_Passage_3\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond815:Na+FK60'\n Cond968:swi1,_YPD_(d)\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond559:alpha56\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond980:F82G_10_mM_1NaPP1\n Cond979:WT_10_mM_1NaPP1\n Cond304:Heat_Shock_30_minutes_hs-1\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Cond577:cdc15_120\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond958:t0.5_g/r_ratio\n Cond330:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_15_minutes\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n Cond950:TPK1_MT1val\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond913:(99i3)_S150-2B_YPD_NormInt\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mAAH1:adenine aminohydrolase (adenine deaminase),adenine aminohydr\nolase (adenine deaminase),Null mutant is viable\n Cond579:cdc15_140\n Cond352:1_mM_Menadione_(120_min)redo\n Cond315:37C_to_25C_shock_-_15_min\n Cond976:F82G_1_mM_1NaPP1\n Cond674:DES459_(mec1)_+_heat_20_min\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond955:TPK3_MT1val\n Cond373:1.5_mM_diamide_(40_min)\n Cond822:tlc1_Expt.1_Passage_3\n Cond30:clb6\n Cond802:CaFK30'\n Cond300:Heat_Shock_05_minutes_hs-1\n Cond916:(99i5)__HBY4_YPGL+G_NormInt\n Cond814:Na+FK45'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond769:Acid_80'\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond245:ymr014w\n Cond335:constant_0.32_mM_H2O2_(10_min)_redo\n Cond395:Nitrogen_Depletion_30_min.\n Cond279:ERG11(tetpromoter)\n Cond553:alpha14\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond807:crz1/Ca30'\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond797:Ca15'\n Cond936:12h\n Cond361:2.5mM_DTT_180_min_dtt-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond367:dtt_240_min_dtt-2\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond481:WT+/-100mM3AT(SetB)(491)\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond293:HU\n Cond818:crz1/Na30'\n Cond378:1M_sorbitol_-_15_min\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond365:dtt_060_min_dtt-2\n Cond951:WT2val\n mPRP43:Pre-mRNA processing factor involved in disassembly of splice\nosomes after the release of mature mRNA,RNA helicase,\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond374:1.5_mM_diamide_(50_min)\n Cond959:t2_g/r_ratio\n mRFC5:RFC is a multisubunit DNA binding protein and ATPase that ac\nts as a processivity factor for DNA polymerases delta and ep\nsilon and loads proliferating cell nuclear antigen (PCNA) on\n DNA,replication factor C subunit 5 , similar to human RFC 3\n8 kDa subunit,Null mutant is inviable\n Cond809:Na30'\n Cond325:29C_to_33C_-_5_minutes\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond859:ms221-30\n Cond952:TPK1_MT2val\n Cond366:dtt_120_min_dtt-2\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Cond584:cdc15_190\n mYDR365C:Unknown ,, Unknown\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond650:wt_plus_gamma_5_min\n Cond837:tlc1_Expt.2_Passage_9__\n Cond856:pm38-qtop\n Cond652:wt_plus_gamma_20_min\n Cond899:RPN4_MMS__\n Cond396:Nitrogen_Depletion_1_h\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond658:DES460_(wt)_-_mock_irradiation_-_5_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond552:alpha7\n Cond369:1.5_mM_diamide_(5_min)\n Cond670:DES459_(mec1)_-_mock_irradiation_-_5_min\n Cond585:cdc15_200\n Cond263:ymr269w\n Cond363:dtt_015_min_dtt-2\n Cond782:Peroxide_40'\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond386:Hypo-osmotic_shock_-_30_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond967:swi1,_YPD_(c)\n Cond323:heat_shock_29_to_37,_20_minutes\n Cond488:pho85_vs_WT\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond587:cdc15_220\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond956:TPK3_MT2val\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond420:YPD_3_d_ypd-2\n Cond758:Heat_0'_(A)\n Cond273:yor078w\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond434:DBY7286_37degree_heat_-_20_min\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond589:cdc15_240\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond783:Peroxide_60'\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond762:Heat_45'\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n Cond63:fre6\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond359:2.5mM_DTT_090_min_dtt-1\n Cond417:YPD_12_h_ypd-2\n Cond946:W303ume6_YPD\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Y-Stre.Sorbitol:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond554:alpha21\n Cond876:zero2\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond294:Itraconazole\n mHAS1:Helicase Associated with SET1,RNA-dependent helicase (putati\nve),Null mutant is inviable\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond574:cdc15_90\n mROK1:contains domains found in the DEAD protein family of ATP-dep\nendent RNA helicases; high-copy suppressor of kem1 null muta\nnt,,Null mutant is inviable\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond348:1mM_Menadione_(40_min)_redo\n Cond576:cdc15_110\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond858:pm71-30\n Cond665:mec1_plus_gamma_30_min\n Cond953:TPK2_MT1val\n
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Computational Genomics Lab, Tel-Aviv uniresity