Module number 2897




Database revision : gnsdb28.10
Date : Tue Feb 25 17:42:05 2003
How to read this figure?


Cond796:Ca5'\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond399:Nitrogen_Depletion_8_h\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n Cond675:MHY1_(dun1)_+_heat_20_min\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond362:dtt_000_min__dtt-2\n Cond761:Heat_30'\n Cond400:Nitrogen_Depletion_12_h\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mRPA135:135 kDa subunit of RNA polymerase I,RNA polymerase I subunit\n,suppression of rpb1, cold sensitive\n mBFR1:Multicopy suppressor of BFA (Brefeldin A)-induced lethality;\n implicated in secretion and nuclear segregation,,Null mutan\nt is viable; increase in cell ploidy; defective in nuclear s\negregation, bud formation, cytokinesis, and nuclear spindle \nformation\n Cond883:5\n Cond416:YPD_10_h__ypd-2\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Cond810:Na45'\n mMNN5:mannan synthesis,golgi alpha-1,2-mannosyltransferase (putati\nve),Null mutant is viable but defective in addition of the a\nlpha-1,3-linked mannose branch to the mannan structure found\n on N-linked glycans.\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mRPB5:25-kDa RNA polymerase subunit (common to polymerases I, II a\nnd III),25 kDa RNA polymerase subunit (common to polymerases\n I, II and III),Null mutant is inviable\n Cond373:1.5_mM_diamide_(40_min)\n mPSE1:Functions in nuclear transport of proteins,karyopherin,Null \nmutant is viable but grows very slowly; overexpression of PS\nE1 results in enhanced protein secretion\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond897:STATMMS\n Cond894:G2\n Cond395:Nitrogen_Depletion_30_min.\n Cond553:alpha14\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond404:Nitrogen_Depletion_5_d\n Cond312:Heat_Shock_015_minutes_hs-2\n Cond452:sucrose_vs._reference_pool_car-1\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond430:YPD_stationary_phase_7_d_ypd-1\n Cond797:Ca15'\n Cond367:dtt_240_min_dtt-2\n mMES1:methionyl tRNA synthetase,methionine-tRNA ligase,no growth a\nt 36 degrees C\n mYDL063C:Unknown ,, Unknown\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond481:WT+/-100mM3AT(SetB)(491)\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond378:1M_sorbitol_-_15_min\n mNSR1:nuclear localization sequence binding protein,nuclear locali\nzation sequence binding protein,Null mutant is viable, shows\n severe growth defect.\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond945:W303_YPD\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mSCP160:May be required during cell division for faithful partitioni\nng of the ER-nuclear envelope membranes, involved in control\n of mitotic chromsome transmission,,Null mutant is viable, b\nut exhibits decreased viability, abnormal morphology, and in\ncreased DNA content.\n Cond374:1.5_mM_diamide_(50_min)\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond859:ms221-30\n Cond366:dtt_120_min_dtt-2\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n mSEC63:Protein involved in protein import into ER,,lethal\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond801:CaFK15'\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond899:RPN4_MMS__\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond396:Nitrogen_Depletion_1_h\n Cond982:pho85D_10_mM_1NaPP1_\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n mYCR016W:Unknown ,, Unknown\n Cond887:t-BuOOH\n Cond941:SK1_YPD\n Cond782:Peroxide_40'\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond898:RPN4\n Cond386:Hypo-osmotic_shock_-_30_min\n Cond371:1.5_mM_diamide_(20_min)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond488:pho85_vs_WT\n Cond323:heat_shock_29_to_37,_20_minutes\n mRPF1:protein that localizes to the nucleolus,,\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mNOB1:Unknown ,, Unknown\n Cond855:pm38-30\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n Cond920:3h\n Cond857:pm38-gtoe\n mYLR431C:Unknown ,, Unknown\n Cond449:glucose_vs._reference_pool_car-1\n mPRT1:translation initiation factor eIF3 subunit,translation initi\nation factor eIF3 subunit,Null mutant is inviable.\n mGLN4:glutaminyl-tRNA synthetase,glutamine-tRNA ligase,Null mutant\n is inviable\n Cond758:Heat_0'_(A)\n Cond317:37C_to_25C_shock_-_45_min\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mRRP6:Ribosomal RNA Processing,,Null mutant is viable, heat sensit\nive; other mutants show a 5.8S rRNA 3' end formation defect\n mYOR091W:Unknown ,, Unknown\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n Cond419:YPD_2_d_ypd-2\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond783:Peroxide_60'\n Cond762:Heat_45'\n Cond882:zero3\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n mPMT4:Transfers mannose residues from dolichyl phosphate-D-mannose\n to specific serine/threonine residues of proteins in the se\ncretory pathway,dolichyl phosphate-D-mannose:protein O-D-man\nnosyltransferase,Null mutant is viable but shows under glyco\nsylation of chitinase; pmt2 pmt3 pmt4 triple mutant is invia\nble\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n Cond417:YPD_12_h_ypd-2\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond403:Nitrogen_Depletion_3_d\n Cond415:YPD_8_h_ypd-2\n Cond402:Nitrogen_Depletion_2_d\n mUTP19:Unknown ,, Unknown\n Cond372:1.5_mM_diamide_(30_min)\n Cond876:zero2\n mTIF4631:also called eIF4 (eIF-4) gamma,150 kDa subunit , Tif4632p an\nd mammalian p220 homolog , mRNA cap binding protein eIF-4F,N\null mutant is viable, grows slowly and is cold-sensitive. ti\nf4631 tif4632 double deletion mutants are inviable\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mYPL207W:Unknown ,, Unknown\n Cond360:2.5mM_DTT_120_min_dtt-1\n Cond401:Nitrogen_Depletion_1_d\n Cond324:heat_shock_33_to_37,_20_minutes\n mVPS66:Unknown ,, Unknown\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond938:2h\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond980:F82G_10_mM_1NaPP1\n Cond858:pm71-30\n Cond979:WT_10_mM_1NaPP1\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Cond304:Heat_Shock_30_minutes_hs-1\n Cond958:t0.5_g/r_ratio\n
this is an automaticly generated SAMBA report
Computational Genomics Lab, Tel-Aviv uniresity