Module number 27




Database revision : gnsdb28.10
Date : Tue Feb 25 17:31:36 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond277:AUR1(tetpromoter)\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Cond698:gal3-gal\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond221:yer083c\n Cond104:npr2\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Cond407:diauxic_shift_timecourse11.5_\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond520:hog1Dą1Msorbitol,2hrslog10(intensity)\n Cond675:MHY1_(dun1)_+_heat_20_min\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond740: Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond697:gal2-gal\n mMTD1:NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase,N\nAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase,Nu\nll mutant is viable, associated with loss of NAD-dependent 5\n,10-methylene-THF dehydrogenase activity and a purine requir\nement in some genetic backgrounds\n Cond352:1_mM_Menadione_(120_min)redo\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond315:37C_to_25C_shock_-_15_min\n Cond412:YPD_2_h_ypd-2\n Cond467:steady_state_21_dec_C_ct-2\n Cond674:DES459_(mec1)_+_heat_20_min\n Cond244:ymr010w\n Cond890:G1\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond142:rps27b(**11)\n Cond702:gal7-gal\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond391:aa_starv_1_h\n Cond696:gal1-gal\n Cond562:alpha77\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n Cond668:mec1_plus_gamma_90_min\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond311:Heat_Shock_005_minutes_hs-2\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond318:37C_to_25C_shock_-_60_min\n Cond530:GAL-BNI1D,3hrs.gallog10(intensity)\n Cond673:DES460_(wild_type)_+_heat_20_min\n Cond704:gal80-gal\n Cond395:Nitrogen_Depletion_30_min.\n Cond279:ERG11(tetpromoter)\n Cond701:gal6-gal\n Cond910:(83i4)_S150-2B_YPGL+G_NormInt\n Cond508:bni1Dą50nMaF,120minlog10(intensity)\n Cond689:gal3+gal\n Cond216:yer044c(haploid)\n mSHM2:serine hydroxymethyltransferase,,Null mutant is viable\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond693:gal7+gal\n Cond914:(99i2)_S150-2B_YPGL+G_NormInt\n Cond226:yhl029c\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond694:gal10+gal\n Cond936:12h\n Cond700:gal5-gal\n Cond688:gal2+gal\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond481:WT+/-100mM3AT(SetB)(491)\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond54:erg3(haploid)\n mGCV1:Required for metabolizing glycine as a nitrogen source,glyci\nne decarboxylase complex T subunit,Null mutant is viable but\n cannot use glycine as sole nitrogen source\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n Cond572:cdc15_70\n mGCV2:Glycine CleaVage system,glycine cleavage system P subunit , \nglycine decarboxylase complex P subunit , glycine synthase P\n subunit,Inability to convert glycine to serine (ser1 backgr\nound); Inability to utilize glycine as a nitogen source.\n Cond734: Cond904:(77i3)_HBY4_YPGL+G_NormInt\n Cond26:cka2\n Cond9:ard1\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond56:erg5\n Cond413:YPD_4_h_ypd-2\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond746: Cond314:Heat_Shock_060_minutes__hs-2\n Y-Stre.Alkali:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond687:gal1+gal\n Cond691:gal5+gal\n Cond370:1.5_mM_diamide_(10_min)\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond942:SK1ume6_YPD\n Cond737: Cond461:21_deg_growth_ct-1\n Cond555:alpha28\n Cond690:gal4+gal\n Cond813:Na+FK30'\n Cond152:scs7\n Cond970:swi1,_minimal_(c)\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond343:constant_0.32_mM_H2O2_(120_min)_redo\n Cond408:diauxic_shift_timecourse_13.5_h\n Cond540:fus3Dtec1Dą50nMaF,30minlog10(intensity)\n Cond254:ymr044w\n Cond160:sir4\n Cond438:DBYyap1_+_37degree_heat_(repeat)\n Cond510:fus3Dą50nMaF,30minlog10(intensity)\n Cond839:expt2\n Cond40:dig1,dig2\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond664:mec1_plus_gamma_20_min\n Cond423:YPD_stationary_phase_4_h_ypd-1\n Cond899:RPN4_MMS__\n Cond397:Nitrogen_Depletion_2_h\n Cond102:mrt4\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond136:rpl27a(**4)\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond396:Nitrogen_Depletion_1_h\n Cond462:25_deg_growth_ct-1\n Cond260:ymr237w\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond887:t-BuOOH\n Cond552:alpha7\n Cond89:isw2\n Cond188:vma8\n Cond971:swi1,_minimal_(d)_\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond99:med2(haploid)\n Cond331:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_30_minutes\n Cond353:1_mM_Menadione_(160_min)_redo\n Cond2:ade2(haploid)\n Cond386:Hypo-osmotic_shock_-_30_min\n Cond28:cla4(haploid)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond384:Hypo-osmotic_shock_-_5_min\n Cond880:BCNU\n Cond943:SK1_YPA\n Cond53:erg2\n Cond733: Cond772:Alkali_20'\n Cond872:Zero1\n Cond651:wt_plus_gamma_10_min\n Cond889:4NQO_2\n Cond344:constant_0.32_mM_H2O2_(160_min)_redo\n Cond759:Heat_0'_(B)\n Cond532:GAL-RHO1-Q68H,3hrs.gallog10(intensity)\n Cond937:t=0\n Cond753: Cond6:anp1\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond934:8h\n Cond920:3h\n Cond705:gal1gal10+gal\n Cond773:Alkali_40'\n Cond341:constant_0.32_mM_H2O2_(80_min)_redo\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond85:imp2\n Cond983:WT_vs_pho85D\n Cond466:steady_state_17_dec_C_ct-2\n Cond379:1M_sorbitol_-_30_min\n Cond935:10h\n Cond387:Hypo-osmotic_shock_-_45_min\n Cond229:yhr011w(**14)\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Cond758:Heat_0'_(A)\n Cond515:far1Dą50nMaF,30minlog10(intensity)\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond287:2-deoxy-D-glucose\n Cond350:1_mM_Menadione_(80_min)_redo\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond589:cdc15_240\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond478:WT+/-10mM3AT(R491)\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond895:G2MMS\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond278:CDC42(tetpromoter)\n Cond43:dot4\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n Cond460:17_deg_growth_ct-1\n Cond563:alpha84\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond877:MMS\n Cond906:(77i5)_S150-2B_YPD_NormInt\n Cond946:W303ume6_YPD\n Cond838:expt1\n Cond666:mec1_plus_gamma_45_min\n Cond62:fpr1\n Cond83:hpt1\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mADE2:phosphoribosylamino-imidazole-carboxylase,phosphoribosylamin\no-imidazole-carboxylase,Null mutant is viable and requires a\ndenine. ade2 mutants are blocked at a stage in the adenine b\niosynthetic pathway that causes an intermediate to accumulat\ne in the vacuole; the intermediate gives the cell a red colo\nr.\n Cond175:swi4\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond319:37C_to_25C_shock_-_90_min\n Cond686:wt+gal\n Cond685:wt-gal\n Cond398:Nitrogen_Depletion_4_h\n Cond738:90\n Cond667:mec1_plus_gamma_60_min\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond776:Alkali_100'\n Cond294:Itraconazole\n Cond327:29C_to_33C_-_30_minutes\n Cond380:1M_sorbitol_-_45_min_\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond351:1_mM_Menadione_(105_min)_redo\n Cond265:ymr293c\n Cond299:Tunicamycin\n Cond699:gal4-gal\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond161:sod1(haploid)\n Cond771:Alkali_10'\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond35:cup5\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond392:aa_starv_2_h\n mADE17:AICAR transformylase/IMP cyclohydrolase,5-aminoimidazole-4-c\narboxamide ribonucleotide (AICAR) transformylase/IMP cyclohy\ndrolase,Null mutant is viable; ade16 ade17 double mutants re\nquire adenine\n Cond307:Heat_Shock_80_minutes_hs-1\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond703:gal10-gal\n Cond884:10\n
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Computational Genomics Lab, Tel-Aviv uniresity