Module number 2610




Database revision : gnsdb28.10
Date : Tue Feb 25 17:22:59 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond755: Cond498:wtħ500nMaF,30minlog10(intensity)\n Cond277:AUR1(tetpromoter)\n Cond663:mec1_plus_gamma_10_min\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond912:(99i1)_S150-2B_YPGL_NormInt\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Cond494:wtħ5nMaF,30minlog10(intensity)\n Cond565:alpha98\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond548:cln3-2\n Cond578:cdc15_130\n Cond744: Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n mURA3:orotidine-5'-phosphate decarboxylase,orotidine-5'-phosphate \ndecarboxylase,Null mutant is viable, uracil auxotroph\n Cond13:ase1(**12)\n Cond520:hog1Dħ1Msorbitol,2hrslog10(intensity)\n Cond751: Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond533:fus3D+50nMaF/wt+50nMaF,30minlog10(intensity)\n Cond362:dtt_000_min__dtt-2\n Cond735: Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond834:tlc1_Expt.2_Passage_6\n Cond657:wt_plus_gamma_120_min\n Cond556:alpha35\n Cell Cycle.ko:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond573:cdc15_80\n Calcin.NaNa:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond364:dtt_030_min__dtt-2\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond822:tlc1_Expt.1_Passage_3\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond802:CaFK30'\n Cond916:(99i5)__HBY4_YPGL+G_NormInt\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond393:aa_starv_4_h\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond966:swi1,_YPD_(a)\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond318:37C_to_25C_shock_-_60_min\n Cond491:wt+/-0.15nMalphaF,30minlog10(intensity)\n Cond335:constant_0.32_mM_H2O2_(10_min)_redo\n Cond817:Na/Na+FK45'\n Cond279:ERG11(tetpromoter)\n Cond553:alpha14\n Cond752: Cond508:bni1Dħ50nMaF,120minlog10(intensity)\n Cond749: Cond852:30_min\n Cond902:(77i1)_HBY4_YPGL_NormInt\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond569:cdc15_10\n Cond807:crz1/Ca30'\n Cond580:cdc15_150\n Cond804:Ca/Ca+FK15'\n Cond361:2.5mM_DTT_180_min_dtt-1\n Cond367:dtt_240_min_dtt-2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond908:(83i2)_HBY4_YPGL_NormInt\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond581:cdc15_160\n Cond572:cdc15_70\n Cond734: Cond512:GAL-STE5-CTM,3hrs.gallog10(intensity)\n Cond816:Na/Na+FK30'\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n mSDC1:YDR469W,,\n Cond582:cdc15_170\n Cond653:wt_plus_gamma_30_min\n Cond205:yel033w\n Cond833:tlc1_Expt.2_Passage_5\n Cond162:spf1\n Cond571:cdc15_50\n Cond634:DES460_+_0.02%_MMS_-_15_min\n Cond809:Na30'\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond969:swi1,_minimal_(a)\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond583:cdc15_180\n Cond905:(77i4)_S150-2B_YPGL+G__NormInt\n Cond742: Cond366:dtt_120_min_dtt-2\n Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond555:alpha28\n Cond493:wtħ1.5nMaF,30minlog10(intensity)\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Cond828:tlc1_Expt.1_Passage_9\n Cond813:Na+FK30'\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond570:cdc15_30\n Cond970:swi1,_minimal_(c)\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond503:wtħ50nMaF,60minlog10(intensity)\n Cond584:cdc15_190\n Cond511:GAL-STE4,3hrs.gallog10(intensity)\n Cond441:DBYmsn2/4_(real_strain)_+_0.32_mM_H2O2_(20_min)\n Cond650:wt_plus_gamma_5_min\n Cond564:alpha91\n Cond438:DBYyap1_+_37degree_heat_(repeat)\n Cond510:fus3Dħ50nMaF,30minlog10(intensity)\n Cond652:wt_plus_gamma_20_min\n Cond547:cln3-1\n Cond390:aa_starv_0.5_h\n Cond978:pho85D_1_mM_1NaPP1_\n Cond305:Heat_Shock_40_minutes_hs-1\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond982:pho85D_10_mM_1NaPP1_\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond369:1.5_mM_diamide_(5_min)\n Cond29:clb2\n Cond552:alpha7\n Cond500:wtħ50nMaF,15minlog10(intensity)\n Cond130:rml2(**13)\n Cond654:wt_plus_gamma_45_min\n Cond670:DES459_(mec1)_-_mock_irradiation_-_5_min\n Cond824:tlc1_Expt.1_Passage_5\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond363:dtt_015_min_dtt-2\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n Cond224:CMD1(tetpromoter)\n Cond971:swi1,_minimal_(d)_\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond504:wtħ50nMaF,90minlog10(intensity)\n Cond561:alpha70\n Cond99:med2(haploid)\n Cond331:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_30_minutes\n Cond353:1_mM_Menadione_(160_min)_redo\n Cond15:bim1(**15)\n Cond519:rst1Drst2Dħ50nMaF,30minlog10(intensity)\n Cond745: Cond377:1M_sorbitol_-_5_min\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond656:wt_plus_gamma_90_min\n Cond53:erg2\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond651:wt_plus_gamma_10_min\n Cond507:bni1Dħ50nMaF,90minlog10(intensity)\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond509:kss1Dħ50nMaF,30minlog10(intensity)\n Cond739: Cond496:wtħ50nMaF,30minlog10(intensity)\n Cond748: Cond587:cdc15_220\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond937:t=0\n Cond753: Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond566:alpha105\n Cond495:wtħ15.8nMaF,30minlog10(intensity)\n Cond78:hir2\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond588:cdc15_230\n Cond983:WT_vs_pho85D\n Cond379:1M_sorbitol_-_30_min\n Cond515:far1Dħ50nMaF,30minlog10(intensity)\n mHHT1:Histone H3 (HHT1 and HHT2 code for identical proteins),histo\nne H3 (HHT1 and HHT2 code for identical proteins),Null mutan\nt is viable\n Cond557:alpha42\n mHHT2:Histone H3 (HHT1 and HHT2 code for identical proteins),histo\nne H3 (HHT1 and HHT2 code for identical proteins),\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond287:2-deoxy-D-glucose\n Cond506:bni1Dħ50nMaF,60minlog10(intensity)\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond589:cdc15_240\n Cond844:expt7\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond278:CDC42(tetpromoter)\n Cond139:rpl8a\n Cond43:dot4\n Cond333:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_15_minutes\n Cond502:wtħ50nMaF,45minlog10(intensity)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond563:alpha84\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n Cond134:rpl12a\n Cond906:(77i5)_S150-2B_YPD_NormInt\n Cond666:mec1_plus_gamma_45_min\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Cond175:swi4\n Cond806:crz1/Ca15'\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond501:wt+/-50nMaF,30minlog10(intensity)\n mHTA1:Histone H2A (HTA1 and HTA2 code for nearly identical protein\ns),histone H2A (HTA1 and HTA2 code for nearly identical prot\neins),Null mutant is viable\n Cond319:37C_to_25C_shock_-_90_min\n mHTA2:Histone H2A (HTA1 and HTA2 code for nearly identical protein\ns),histone H2A (HTA1 and HTA2 code for nearly identical prot\neins),Null mutant is viable. Deletion of the HTA2-HTB2 (TRT2\n) locus has no reported observable phenotypes, presumably be\ncause HTA1-HTB1 (TRT1) expression is upregulated and can com\npensate in the absence of TRT2. Overexpression of TRT2 can s\nuppress Ty insertion mutations\n Cond153:sgs1\n Cond398:Nitrogen_Depletion_4_h\n Cond738:90\n Cond667:mec1_plus_gamma_60_min\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond575:cdc15_100\n mHHF1:Histone H4 (HHF1 and HHF2 code for identical proteins),histo\nne H4 (HHF1 and HHF2 code for identical proteins),\n Cond283:KAR2(tetpromoter)\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n mHHF2:Histone H4 (HHF1 and HHF2 code for identical proteins),histo\nne H4 (HHF1 and HHF2 code for identical proteins),\n Cond360:2.5mM_DTT_120_min_dtt-1\n Cond294:Itraconazole\n Cond984:pho85D_DMSO_24_hrs._vs._F82G_10_mM_1-Na_PP1_24_hrs._\n Cond380:1M_sorbitol_-_45_min_\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond747: Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond497:wtħ158nMaF,30minlog10(intensity)\n Cond560:alpha63\n Cond576:cdc15_110\n Cond968:swi1,_YPD_(d)\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond161:sod1(haploid)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond473:WT+/-MMS(DBY747)\n Cond133:rpd3(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond655:wt_plus_gamma_60_min\n Cond641:DES459_(mec1-)_+_0.02%_MMS_-_15_min\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond577:cdc15_120\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n mHTB1:Histone H2B (HTB1 and HTB2 code for nearly identical protein\ns),histone H2B (HTB1 and HTB2 code for nearly identical prot\neins),Null mutant is viable\n Cond665:mec1_plus_gamma_30_min\n Cond551:alpha0\n mHTB2:Histone H2B (HTB1 and HTB2 code for nearly identical protein\ns),histone H2B (HTB1 and HTB2 code for nearly identical prot\neins),Null mutant is viable. Deletion of the HTA2-HTB2 (TRT2\n) locus has no reported observable phenotypes, presumably be\ncause HTA1-HTB1 (TRT1) expression is upregulated and can com\npensate in the absence of TRT2\n Cond958:t0.5_g/r_ratio\n Cond939:4h\n mHHF1 mHHT1 mHTA1 mHHT2 mHHF2 mHTB1
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Computational Genomics Lab, Tel-Aviv uniresity