Module number 2250




Database revision : gnsdb28.10
Date : Tue Feb 25 17:10:36 2003
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Cond498:wtħ500nMaF,30minlog10(intensity)\n Cond755: Cond826:tlc1_Expt.1_Passage_7\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond494:wtħ5nMaF,30minlog10(intensity)\n Cond565:alpha98\n Cond798:Ca30'\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond548:cln3-2\n Cond578:cdc15_130\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond164:sst2(haploid)\n Cond13:ase1(**12)\n Cond751: Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond533:fus3D+50nMaF/wt+50nMaF,30minlog10(intensity)\n Cond362:dtt_000_min__dtt-2\n Cond735: Cond648:dun1-_+_0.02%_MMS_-_90_min\n Cond834:tlc1_Expt.2_Passage_6\n Cond556:alpha35\n Cond883:5\n Cell Cycle.ko:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond573:cdc15_80\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond822:tlc1_Expt.1_Passage_3\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond517:sst2D/wtlog10(intensity)\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond318:37C_to_25C_shock_-_60_min\n mHTZ1:Histone-related protein that can suppress histone H4 point m\nutation,evolutionarily conserved member of the histone H2A F\n/Z family of histone variants,Null mutant is viable at 28C; \nhigh copy suppressor of histone H4 point mutant affecting nu\ncleosome structure\n Cond279:ERG11(tetpromoter)\n Cond553:alpha14\n Cond752: Cond508:bni1Dħ50nMaF,120minlog10(intensity)\n Cond749: mYGL101W:Unknown ,, Unknown\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond807:crz1/Ca30'\n Cond580:cdc15_150\n Cond804:Ca/Ca+FK15'\n Cond367:dtt_240_min_dtt-2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond572:cdc15_70\n Cond558:alpha49\n Cond512:GAL-STE5-CTM,3hrs.gallog10(intensity)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond819:crz1/Na45'_\n Cond582:cdc15_170\n Cond653:wt_plus_gamma_30_min\n Cond833:tlc1_Expt.2_Passage_5\n Cond162:spf1\n Cond571:cdc15_50\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond969:swi1,_minimal_(a)\n Cond742: Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond555:alpha28\n Cond493:wtħ1.5nMaF,30minlog10(intensity)\n Cond828:tlc1_Expt.1_Passage_9\n Cond570:cdc15_30\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond503:wtħ50nMaF,60minlog10(intensity)\n Cond584:cdc15_190\n Cond511:GAL-STE4,3hrs.gallog10(intensity)\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond564:alpha91\n Cond438:DBYyap1_+_37degree_heat_(repeat)\n Cond510:fus3Dħ50nMaF,30minlog10(intensity)\n Cond652:wt_plus_gamma_20_min\n Cond547:cln3-1\n Cond664:mec1_plus_gamma_20_min\n Cond281:HMG2(tetpromoter)\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond978:pho85D_1_mM_1NaPP1_\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond29:clb2\n Cond552:alpha7\n Cond500:wtħ50nMaF,15minlog10(intensity)\n Cond654:wt_plus_gamma_45_min\n Cond824:tlc1_Expt.1_Passage_5\n Cond363:dtt_015_min_dtt-2\n Cond224:CMD1(tetpromoter)\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond504:wtħ50nMaF,90minlog10(intensity)\n Cond561:alpha70\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond99:med2(haploid)\n Cond15:bim1(**15)\n Cond519:rst1Drst2Dħ50nMaF,30minlog10(intensity)\n Cond745: Cond124:rad6(haploid)\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond656:wt_plus_gamma_90_min\n Cond651:wt_plus_gamma_10_min\n Cond507:bni1Dħ50nMaF,90minlog10(intensity)\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond509:kss1Dħ50nMaF,30minlog10(intensity)\n Cond739: Cond496:wtħ50nMaF,30minlog10(intensity)\n Cond748: Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond566:alpha105\n Cond495:wtħ15.8nMaF,30minlog10(intensity)\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond983:WT_vs_pho85D\n Cond379:1M_sorbitol_-_30_min\n Cond557:alpha42\n Cond506:bni1Dħ50nMaF,60minlog10(intensity)\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond783:Peroxide_60'\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond278:CDC42(tetpromoter)\n Cond139:rpl8a\n Cond502:wtħ50nMaF,45minlog10(intensity)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond563:alpha84\n Cond877:MMS\n Cond132:rnr1(haploid**9)\n Cond906:(77i5)_S150-2B_YPD_NormInt\n Cond666:mec1_plus_gamma_45_min\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Cond175:swi4\n Cond806:crz1/Ca15'\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond501:wt+/-50nMaF,30minlog10(intensity)\n mHTA1:Histone H2A (HTA1 and HTA2 code for nearly identical protein\ns),histone H2A (HTA1 and HTA2 code for nearly identical prot\neins),Null mutant is viable\n Cond319:37C_to_25C_shock_-_90_min\n mHTA2:Histone H2A (HTA1 and HTA2 code for nearly identical protein\ns),histone H2A (HTA1 and HTA2 code for nearly identical prot\neins),Null mutant is viable. Deletion of the HTA2-HTB2 (TRT2\n) locus has no reported observable phenotypes, presumably be\ncause HTA1-HTB1 (TRT1) expression is upregulated and can com\npensate in the absence of TRT2. Overexpression of TRT2 can s\nuppress Ty insertion mutations\n Cond153:sgs1\n Cond738:90\n Cond667:mec1_plus_gamma_60_min\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mHHF1:Histone H4 (HHF1 and HHF2 code for identical proteins),histo\nne H4 (HHF1 and HHF2 code for identical proteins),\n Cond283:KAR2(tetpromoter)\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond743: Cond294:Itraconazole\n Cond380:1M_sorbitol_-_45_min_\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond747: Cond497:wtħ158nMaF,30minlog10(intensity)\n Cond560:alpha63\n Cond576:cdc15_110\n mYOR246C:Unknown ,, Unknown\n mYDR274C:Unknown ,, Unknown\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cond161:sod1(haploid)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond655:wt_plus_gamma_60_min\n Cond521:fus3-K42Dħ50nMaF,30minlog10(intensity)\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond577:cdc15_120\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Cond551:alpha0\n mHTB2:Histone H2B (HTB1 and HTB2 code for nearly identical protein\ns),histone H2B (HTB1 and HTB2 code for nearly identical prot\neins),Null mutant is viable. Deletion of the HTA2-HTB2 (TRT2\n) locus has no reported observable phenotypes, presumably be\ncause HTA1-HTB1 (TRT1) expression is upregulated and can com\npensate in the absence of TRT2\n Cond939:4h\n mHHF1 mHTA1
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Computational Genomics Lab, Tel-Aviv uniresity