Module number 2227




Database revision : gnsdb28.10
Date : Tue Feb 25 17:05:24 2003
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Cond498:wtħ500nMaF,30minlog10(intensity)\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Cond476:GCN4C/GCN4(R4760/R6257)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond494:wtħ5nMaF,30minlog10(intensity)\n Cond565:alpha98\n Cond548:cln3-2\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Cond744: Cond520:hog1Dħ1Msorbitol,2hrslog10(intensity)\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond400:Nitrogen_Depletion_12_h\n Cond740: Cond4:afg3(haploid)\n Cond556:alpha35\n Cell Cycle.ko:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n mFUS1:cell-surface protein required for cell fusion,,Null mutant i\ns viable; in fus1 x fus1 matings there is an interruption of\n the mating process just before cytoplasmic fusion\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond81:hog1(haploid)\n Cond890:G1\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond522:fus3Dkss1D/wtlog10(intensity)\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n Cond668:mec1_plus_gamma_90_min\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond166:ste11(haploid)\n Cond769:Acid_80'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n mBAR1:extracellular protease synthesized in a-cells that cleaves a\nnd inactivates alpha factor,protease , synthesized in a-cell\ns; cleaves and inactivates alpha factor,MATa bar1 cells are \nsupersensitive to the G1 arrest induced by alpha factor\n Cond530:GAL-BNI1D,3hrs.gallog10(intensity)\n Cond568:alpha119\n Cond677:DES459_(mec1)_-_log_phase_(IR_time_=_0_sample)\n Cond491:wt+/-0.15nMalphaF,30minlog10(intensity)\n Cond523:ste4D/wtlog10(intensity)\n Cond279:ERG11(tetpromoter)\n mPHO3:Acid phosphatase, constitutive,acid phosphatase,phosphatase \ndeficient\n Cond404:Nitrogen_Depletion_5_d\n mPHO5:Acid phosphatase, repressible,acid phosphatase,phosphatase d\neficient\n Cond508:bni1Dħ50nMaF,120minlog10(intensity)\n Cond216:yer044c(haploid)\n mFAR1:Factor arrest protein,Cdc28p kinase inhibitor,\n Cond524:ste5D/wtlog10(intensity)\n Cond430:YPD_stationary_phase_7_d_ypd-1\n Cond797:Ca15'\n mMFA1:a-factor mating pheromone precursor,a-factor mating pheromon\ne precursor,\n Cond700:gal5-gal\n Cond127:ras2(haploid)\n Cond767:Acid_40'\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond558:alpha49\n Cond572:cdc15_70\n Cond293:HU\n Cond972:anc1\n Cond20:bub3(haploid**2)\n Cond542:fus3Dtec1D+50nMaF,30min/wtlog10(intensity)\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond80:hmg1(haploid)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond582:cdc15_170\n Cond687:gal1+gal\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond571:cdc15_50\n Cond41:dig1,dig2(haploid)\n SSD1.ANC1: Cond499:wtħ50nMaF,0minlog10(intensity)\n Cond891:G1MMS\n Cond492:wt+/-0.5nMalphaF,30minlog10(intensity)\n Cond737: mSST2:Protein involved in desensitization to alpha-factor pheromon\ne,GTPase activating protein (GAP) , RGS (regulator of G-prot\nein signalling) family,Null mutants are viable and exhibit i\nncreased sensitivity to mating factors\n Cond66:fus3,kss1(haploid)\n Cond555:alpha28\n Cond493:wtħ1.5nMaF,30minlog10(intensity)\n Cond173:ste5(haploid)\n Cond970:swi1,_minimal_(c)\n Cond381:1M_sorbitol_-_60_min\n Cond511:GAL-STE4,3hrs.gallog10(intensity)\n Cond584:cdc15_190\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n mAGA1:anchorage subunit of a-agglutinin,a-agglutinin anchorage sub\nunit,mating defect in liquid medium\n Cond540:fus3Dtec1Dħ50nMaF,30minlog10(intensity)\n mAGA2:adhesion subunit of a-agglutinin,a-agglutinin adhesion subun\nit,Null mutant is viable and shows mating defect\n Cond510:fus3Dħ50nMaF,30minlog10(intensity)\n Cond40:dig1,dig2\n Cond526:ste11D/wtlog10(intensity)\n Cond455:YP_galactose_vs_reference_pool_car-2\n mTEC1:transcription factor of the TEA/ATTS DNA-binding domain fami\nly, regulator of Ty1 expression,TEA/ATTS DNA-binding domain \nfamily, regulator of Ty1 expression , transcription factor,N\null mutant is viable\n Cond281:HMG2(tetpromoter)\n mGPA1:Involved in the mating pheromone signal transduction pathway\n; component of pheromone response pathway common to both a a\nnd alpha cells.,G protein alpha subunit , coupled to mating \nfactor receptor , G protein alpha subunit , coupled to matin\ng factor receptor , G protein alpha subunit , coupled to mat\ning factor receptor,The null mutation is inviable in haploid\ns but not diploids. Gpa1 mutants exhibit specific defects in\n the pheromone responsiveness of both a and alpha cells.\n Cond500:wtħ50nMaF,15minlog10(intensity)\n Cond971:swi1,_minimal_(d)_\n Cond770:Acid_100'\n Cond504:wtħ50nMaF,90minlog10(intensity)\n Cond172:ste4(haploid)\n Cond99:med2(haploid)\n Cond447:ethanol_vs._reference_pool_car-1\n Cond15:bim1(**15)\n Cond745: Cond516:rst1Drst2D/wtlog10(intensity)\n Cond124:rad6(haploid)\n Cond967:swi1,_YPD_(c)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond507:bni1Dħ50nMaF,90minlog10(intensity)\n Cond525:ste7D/wtlog10(intensity)\n Cond509:kss1Dħ50nMaF,30minlog10(intensity)\n Cond496:wtħ50nMaF,30minlog10(intensity)\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond531:GAL-PKC1-R398A,3hrs.gallog10(intensity)\n Cond753: Cond764:Heat_120'\n Cond298:Terbinafine\n Cond495:wtħ15.8nMaF,30minlog10(intensity)\n Cond705:gal1gal10+gal\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond588:cdc15_230\n Cond193:yal004w\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Cond515:far1Dħ50nMaF,30minlog10(intensity)\n Cond557:alpha42\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond506:bni1Dħ50nMaF,60minlog10(intensity)\n Cond518:ste20Dħ50nMaF,30minlog10(intensity)\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond589:cdc15_240\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond528:ste18D/wtlog10(intensity)\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond625:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y12-121\n mYML095C-A:Unknown ,, Unknown\n Cond278:CDC42(tetpromoter)\n Cond502:wtħ50nMaF,45minlog10(intensity)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond527:ste12D/wtlog10(intensity)\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n mSTE2:alpha-factor pheromone receptor; seven-transmembrane domain \nprotein,alpha-factor pheromone receptor , seven-transmembran\ne domain protein,Null mutant is viable but sterile.\n Cond132:rnr1(haploid**9)\n Cond171:ste24(haploid)\n Cond666:mec1_plus_gamma_45_min\n Cond236:yjl107c(haploid)\n Cond799:Ca60'\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond403:Nitrogen_Depletion_3_d\n Cond501:wt+/-50nMaF,30minlog10(intensity)\n Cond402:Nitrogen_Depletion_2_d\n Cond738:90\n Cond667:mec1_plus_gamma_60_min\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond283:KAR2(tetpromoter)\n Cond401:Nitrogen_Depletion_1_d\n Cond167:ste12(haploid)\n Cond574:cdc15_90\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond543:rst1Drst2Dtec1D/wtlog10(intensity)\n Cond295:Lovastatin\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond497:wtħ158nMaF,30minlog10(intensity)\n Cond168:ste18(haploid)\n Cond968:swi1,_YPD_(d)\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond161:sod1(haploid)\n Cond274:yor080w(**3)\n Cond736: Cond174:ste7(haploid)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond133:rpd3(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond521:fus3-K42Dħ50nMaF,30minlog10(intensity)\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Cond551:alpha0\n
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Computational Genomics Lab, Tel-Aviv uniresity