Module number 219




Database revision : gnsdb28.10
Date : Tue Feb 25 17:25:13 2003
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Cond72:gpa2\n Cond498:wtħ500nMaF,30minlog10(intensity)\n Cond8:aqy2-b\n Cond158:sir2\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Cond476:GCN4C/GCN4(R4760/R6257)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond221:yer083c\n Cond104:npr2\n Cond388:Hypo-osmotic_shock_-_60_min\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond266:ynd1\n Cond520:hog1Dħ1Msorbitol,2hrslog10(intensity)\n Cond751: Cond13:ase1(**12)\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond241:yml033w\n Cond362:dtt_000_min__dtt-2\n Cond537:kss1D/wtlog10(intensity)\n Cond740: Cond735: Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond730:hda1\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond105:nrf1\n Cond157:sir1\n Cond976:F82G_1_mM_1NaPP1\n Cond810:Na45'\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond209:yel067c\n Cond244:ymr010w\n Cond81:hog1(haploid)\n Cond445:Msn4_overexpression\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond142:rps27b(**11)\n Cond122:rad27\n Cond562:alpha77\n Cond486:PHO4c_vs_WT\n Cond23:cbp2\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond814:Na+FK45'\n Cond310:Heat_Shock_000_minutes_hs-2\n Cond195:yap3\n Cond668:mec1_plus_gamma_90_min\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond267:yor006c\n Cond231:yhr031c\n Cond966:swi1,_YPD_(a)\n Cond245:ymr014w\n Cond376:1.5_mM_diamide_(90_min)\n Cond50:ecm34\n mSPL2:Suppressor of plc1-delta. Isolated as a dosage suppressor of\n the temperature-sensitive phenotype of a plc1 null mutant. \nAlso suppresses the hyperosmotic-sensitive phenotype of the \nplc1 null mutant.,,Null mutant is viable and shows no obviou\ns phenotype; spl2-delta plc1-delta double mutant fails to gr\now on SCD complete media, but grows on YPD at 25 degrees C\n Cond155:she4\n Cond701:gal6-gal\n mPHO3:Acid phosphatase, constitutive,acid phosphatase,phosphatase \ndeficient\n Cond752: mPHO5:Acid phosphatase, repressible,acid phosphatase,phosphatase d\neficient\n Cond508:bni1Dħ50nMaF,120minlog10(intensity)\n Cond181:top3(haploid)\n mPHO8:repressible alkaline phosphatase,repressible alkaline phosph\natase,phosphatase deficient\n Cond86:imp2'(**12)\n Cond246:ymr025w\n Cond57:erg6\n Cond678:DES459_(mec1)_-_log_phase_(MMS_time_=_0_sample)\n Cond226:yhl029c\n Cond113:pet111\n Cond490:PHO81c_vs_WT_exp2_\n Cond207:yel047c\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond484:Low-Pi_vs_High-Pi_in_WT_(NBW7)_exp2\n Cond145:rts1\n Cond127:ras2(haploid)\n Cond88:isw1,isw2\n Cond46:ecm10\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond784:Peroxide_120'\n Cond68:gas1\n Cond734: Cond972:anc1\n Cond143:rrp6\n Cond26:cka2\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond56:erg5\n Cond69:gcn4\n Cond80:hmg1(haploid)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond100:mnn1\n Cond205:yel033w\n Cond14:ate1\n Cond27:ckb2\n Cond731:hda1 \n Cond73:gyp1\n Cond370:1.5_mM_diamide_(10_min)\n Cond691:gal5+gal\n SSD1.ANC1: Cond230:yhr022c\n Cond25:cin5\n Cond203:yel020c\n Cond461:21_deg_growth_ct-1\n Cond126:ras1(haploid)\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond152:scs7\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond253:ymr041c\n Cond7:aqy2-a\n Cond39:dig1\n Cond169:ste2(haploid)\n Cond40:dig1,dig2\n Cond101:mrpl33\n Cond102:mrt4\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond49:ecm31\n Cond136:rpl27a(**4)\n Cond462:25_deg_growth_ct-1\n Cond45:ecm1(**3)\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond130:rml2(**13)\n Cond89:isw2\n Cond137:rpl34a(**9)\n Cond93:kre1\n Cond487:pho80_vs_WT\n Cond824:tlc1_Expt.1_Passage_5\n Cond188:vma8\n Cond363:dtt_015_min_dtt-2\n Cond202:yel010w\n Cond33:cnb1\n Cond504:wtħ50nMaF,90minlog10(intensity)\n Cond190:vps8\n Cond561:alpha70\n Cond31:cmk2\n Cond140:rps24a(**9)\n Cond729:sin3\n Cond15:bim1(**15)\n Cond898:RPN4\n Cond19:bub3(**2,8,13)\n Cond386:Hypo-osmotic_shock_-_30_min\n Cond112:pep12\n Cond90:jnm1\n Cond967:swi1,_YPD_(c)\n Cond371:1.5_mM_diamide_(20_min)\n Cond488:pho85_vs_WT\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond384:Hypo-osmotic_shock_-_5_min\n Cond733: Cond940:6h\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond739: Cond496:wtħ50nMaF,30minlog10(intensity)\n Cond218:yer066c-a\n Cond753: Cond6:anp1\n Cond934:8h\n Cond920:3h\n Cond64:fus2\n Cond111:pcl6\n Cond78:hir2\n Cond459:YP_sucrose_vs_reference_pool_car-2\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond85:imp2\n Cond983:WT_vs_pho85D\n Cond489:PHO81c_vs_WT_exp1\n Cond466:steady_state_17_dec_C_ct-2\n Cond935:10h\n Cond70:gfd1\n Cond387:Hypo-osmotic_shock_-_45_min\n Cond229:yhr011w(**14)\n Cond271:yor051c(**14)\n Cond515:far1Dħ50nMaF,30minlog10(intensity)\n Cond273:yor078w\n Cond87:isw1\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond48:ecm29\n Cond222:yer084w\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond128:rgt1\n Cond465:steady_state_15_dec_C_ct-2\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond144:rtg1\n Cond150:sbh2\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond17:bub1(haploid**2,10)\n Cond333:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_15_minutes\n Cond43:dot4\n Cond63:fre6\n Cond502:wtħ50nMaF,45minlog10(intensity)\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond460:17_deg_growth_ct-1\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond114:pet117\n Cond666:mec1_plus_gamma_45_min\n Cond62:fpr1\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mVTC1:Null mutant identified in different genetic screens both by \nits ability to reverse the Cdc42p suppression of a cdc24-4ts\n mutant and its ability to suppress the vacuolar ATPase null\n phenotype,S. pombe Nrf1p homolog (97% identical in predicte\nd amino acid sequence),Null mutant is viable, but exhibits b\noth reduced V-ATPase in the vacuolar membrane and reduced H(\n+)-ATPase(Pma1p) in the plasma membrane\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mVTC3:Phosphate metabolism; transcription is regulated by PHO syst\nem,polyphosphate synthetase (putative),Null nutant is viable\n; no polyphosphate accumulation in a vtc2(phm1)/vtc3(phm2) d\nouble disruptant\n mVTC4:Phosphate metabolism; transcription is regulated by PHO syst\nem,polyphosphate synthetase (putative),Null mutant has been \nshown to be either inviable, or viable while exhibiting no p\nolyphosphate accumulation\n Cond501:wt+/-50nMaF,30minlog10(intensity)\n mPHO84:inorganic phosphate transporter, transmembrane protein,inorg\nanic phosphate transporter,Null mutant is viable\n Cond811:Na60'\n Cond349:1_mM_Menadione_(50_min)redo\n Cond1:ade16\n Cond738:90\n Cond667:mec1_plus_gamma_60_min\n Cond483:Low-Pi_vs_High-Pi_in_WT_(NBW7)_exp1\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mPHO89:Probable Na+/Pi symporter,Na+/Pi symporter (putative),Null m\nutant is viable\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond334:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_30_minutes\n Cond159:sir3\n Cond380:1M_sorbitol_-_45_min_\n Cond129:rip1\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mPHO11:Acid phosphatase, secreted,acid phosphatase,phosphatase defi\ncient\n Cond51:eft2\n Cond747: Cond265:ymr293c\n mPHO12:acid phosphotase, nearly identical to Pho11p,acid phosphatas\ne,\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond815:Na+FK60'\n Cond497:wtħ158nMaF,30minlog10(intensity)\n Cond560:alpha63\n Cond968:swi1,_YPD_(d)\n Cond299:Tunicamycin\n Cond274:yor080w(**3)\n Cond133:rpd3(haploid)\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond559:alpha56\n Cond0:ade1\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond980:F82G_10_mM_1NaPP1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Cond551:alpha0\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond958:t0.5_g/r_ratio\n
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Computational Genomics Lab, Tel-Aviv uniresity