Module number 1726




Database revision : gnsdb28.10
Date : Tue Feb 25 17:19:05 2003
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Cond458:YP_raffinose_vs_reference_pool_car-2\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond399:Nitrogen_Depletion_8_h\n Cond944:SK1_ume6_YPA\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond266:ynd1\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond400:Nitrogen_Depletion_12_h\n mASP3-1:nitrogen catabolite-regulated cell-wall L-asparaginase II,ni\ntrogen catabolite-regulated cell-wall L-asparaginase II,\n Cond870:yhe710-30\n mASP3-2:nitrogen catabolite-regulated cell-wall L-asparaginase II,ni\ntrogen catabolite-regulated cell-wall L-asparaginase II,\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mASP3-3:nitrogen catabolite-regulated cell-wall L-asparaginase II,ni\ntrogen catabolite-regulated cell-wall L-asparaginase II,\n mASP3-4:nitrogen catabolite-regulated cell-wall L-asparaginase II,ni\ntrogen catabolite-regulated cell-wall L-asparaginase II,\n Cond352:1_mM_Menadione_(120_min)redo\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond81:hog1(haploid)\n Cond890:G1\n Cond391:aa_starv_1_h\n Cond916:(99i5)__HBY4_YPGL+G_NormInt\n Cond840:expt3\n Cond873:10min\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond376:1.5_mM_diamide_(90_min)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond318:37C_to_25C_shock_-_60_min\n Cond888:MNNG_2\n Cond681:DES460_genomic_DNA_vs._MHY26_(dun1)_genomic_DNA\n Cond155:she4\n Cond404:Nitrogen_Depletion_5_d\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond852:30_min\n Cond214:yer034w\n Cond238:yml005w\n Cond482:WT+/-100mM3AT(SetC)(KNY164)\n Cond694:gal10+gal\n Cond851:15_min\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mYDR327W:Unknown ,, Unknown\n Cond936:12h\n Cond361:2.5mM_DTT_180_min_dtt-1\n Cond367:dtt_240_min_dtt-2\n Cond848:90_min\n Cond88:isw1,isw2\n Cond879:MMC\n Cond918:1h\n Cond54:erg3(haploid)\n Cond422:YPD_stationary_phase_2_h_ypd-1\n Cond68:gas1\n Cond734: Cond358:2.5mM_DTT_060_min_dtt-1\n Cond945:W303_YPD\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond91:kim4\n Cond394:aa_starv_6_h\n Cond374:1.5_mM_diamide_(50_min)\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond162:spf1\n Cond76:hdf1\n mZRT2:Low-affinity zinc transport protein,low affinity zinc transp\nort protein,Null mutant is viable; ZRT2 overexpression incre\nases rate of zinc uptake\n Cond942:SK1ume6_YPD\n Cond969:swi1,_minimal_(a)\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond206:yel044w\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond570:cdc15_30\n Cond970:swi1,_minimal_(c)\n Cond973:WT_vs_F82G_1\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond842:expt5\n Cond115:pet127\n Cond567:alpha112\n Cond477:GCN4/gcn4Din100mM3AT(KNY164/KNY124)\n Cond397:Nitrogen_Depletion_2_h\n Cond368:dtt_480_min_dtt-2\n Cond396:Nitrogen_Depletion_1_h\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond896:STAT\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond941:SK1_YPD\n Cond971:swi1,_minimal_(d)_\n Cond280:FKS1(tetpromoter)\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond99:med2(haploid)\n Cond729:sin3\n Cond2:ade2(haploid)\n Cond249:ymr031c\n Cond28:cla4(haploid)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond967:swi1,_YPD_(c)\n Cond375:1.5_mM_diamide_(60_min)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond656:wt_plus_gamma_90_min\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond525:ste7D/wtlog10(intensity)\n Cond940:6h\n Cond937:t=0\n Cond934:8h\n Cond920:3h\n Cond588:cdc15_230\n Cond935:10h\n mARP7:involved in transcriptional regulation,actin related protein\n , chromatin remodeling Snf/Swi complex subunit,Null mutant \nis viable, exhibits typical swi/snf phenotypes, including gr\nowth defects on media containing galactose, glycerol, or suc\nrose as sole carbon sources. ARP7 is required for expression\n of an HO-lacZ fusion gene and for full transcriptional enha\nncement by the GAL4 activator\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond350:1_mM_Menadione_(80_min)_redo\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond871:yhe710-ss\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond895:G2MMS\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond47:ecm18(**7)\n Cond63:fre6\n Cond882:zero3\n Cond869:yhe711-30\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond841:expt4\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond877:MMS\n Cond132:rnr1(haploid**9)\n Cond359:2.5mM_DTT_090_min_dtt-1\n Cond37:cyt1\n Cond134:rpl12a\n Cond799:Ca60'\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond403:Nitrogen_Depletion_3_d\n Cond319:37C_to_25C_shock_-_90_min\n Cond402:Nitrogen_Depletion_2_d\n Cond398:Nitrogen_Depletion_4_h\n Cond483:Low-Pi_vs_High-Pi_in_WT_(NBW7)_exp1\n Cond876:zero2\n Cond360:2.5mM_DTT_120_min_dtt-1\n Cond401:Nitrogen_Depletion_1_d\n Cond885:20\n Cond257:ymr145c\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond383:1M_sorbitol_-_120_min\n Cond274:yor080w(**3)\n Cond174:ste7(haploid)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond421:YPD_5_d_ypd-2\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond939:4h\n
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Computational Genomics Lab, Tel-Aviv uniresity