Module number 1672




Database revision : gnsdb28.10
Date : Tue Feb 25 17:23:37 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond826:tlc1_Expt.1_Passage_7\n Cond158:sir2\n Cond399:Nitrogen_Depletion_8_h\n Cond407:diauxic_shift_timecourse11.5_\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond631:wt_vs_zap1_-_61_nM_zinc_y13-77\n Cond275:ypl216w\n Cond13:ase1(**12)\n Cond95:mac1\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond196:yap7\n Cond400:Nitrogen_Depletion_12_h\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond157:sir1\n Cond204:yel028w\n Cond244:ymr010w\n Cond289:Cycloheximide\n Cond724:t4+SSD1,H44\n Cond23:cbp2\n Cond713:t4+Vec\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond200:yel001c\n Cond966:swi1,_YPD_(a)\n Cond718:t4+SSD1wt\n Cond155:she4\n Cond689:gal3+gal\n Cond246:ymr025w\n Cond194:yap1\n Cond226:yhl029c\n Cond914:(99i2)_S150-2B_YPGL+G_NormInt\n Cond233:yhr039c\n Cond116:pex12\n Cond143:rrp6\n Cond662:mec1_plus_gamma_5_min\n Cond52:erd1\n Cond9:ard1\n Cond56:erg5\n Cond100:mnn1\n Cond205:yel033w\n Cond370:1.5_mM_diamide_(10_min)\n Cond76:hdf1\n Cond243:ymr009w\n mZRT1:High-affinity zinc transport protein,,disruption viable\n mZRT2:Low-affinity zinc transport protein,low affinity zinc transp\nort protein,Null mutant is viable; ZRT2 overexpression incre\nases rate of zinc uptake\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond21:bul1\n Cond969:swi1,_minimal_(a)\n mZRT3:Hypothetical ORF,,\n Cond203:yel020c\n Cond22:cat8\n Cond272:yor072w\n Cond5:ald5\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond152:scs7\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond97:mak10\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond441:DBYmsn2/4_(real_strain)_+_0.32_mM_H2O2_(20_min)\n Cond7:aqy2-a\n Cond115:pet127\n Cond710:t2+SSD1\n Cond11:arg5,6\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond397:Nitrogen_Depletion_2_h\n Cond390:aa_starv_0.5_h\n Cond136:rpl27a(**4)\n Cond316:37C_to_25C_shock_-_30_min\n Cond741: Cond260:ymr237w\n Cond130:rml2(**13)\n Cond711:t2+Vec\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond971:swi1,_minimal_(d)_\n Cond280:FKS1(tetpromoter)\n Cond190:vps8\n Cond31:cmk2\n Cond99:med2(haploid)\n Cond729:sin3\n Cond124:rad6(haploid)\n Cond19:bub3(**2,8,13)\n Cond112:pep12\n Cond371:1.5_mM_diamide_(20_min)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond880:BCNU\n Cond384:Hypo-osmotic_shock_-_5_min\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond812:Na+FK15'\n Cond6:anp1\n Cond298:Terbinafine\n Cond64:fus2\n Cond85:imp2\n Cond588:cdc15_230\n Cond229:yhr011w(**14)\n Cond70:gfd1\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond717:t2-SSD1\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond258:ymr147w\n Cond278:CDC42(tetpromoter)\n Cond139:rpl8a\n Cond197:yar014c\n Cond725:t4-SSD1,M31\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond114:pet117\n Cond775:Alkali_80'\n Cond349:1_mM_Menadione_(50_min)redo\n Cond372:1.5_mM_diamide_(30_min)\n Cond974:WT_vs_F82G_2\n Cond129:rip1\n Cond103:msu1\n Cond771:Alkali_10'\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond392:aa_starv_2_h\n Cond980:F82G_10_mM_1NaPP1\n Cond979:WT_10_mM_1NaPP1\n Cond307:Heat_Shock_80_minutes_hs-1\n Cond577:cdc15_120\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond939:4h\n Cond277:AUR1(tetpromoter)\n Cond217:yer050c\n Cond663:mec1_plus_gamma_10_min\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond221:yer083c\n Cond183:ubp8\n Cond406:diauxic_shift_timecourse_9.5_h\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond185:ubr2\n Cond412:YPD_2_h_ypd-2\n Cond315:37C_to_25C_shock_-_15_min\n Cond105:nrf1\n Cond883:5\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond192:yaf1\n Cond373:1.5_mM_diamide_(40_min)\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond142:rps27b(**11)\n Cond391:aa_starv_1_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond267:yor006c\n Cond376:1.5_mM_diamide_(90_min)\n Cond245:ymr014w\n Cond184:ubr1\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond335:constant_0.32_mM_H2O2_(10_min)_redo\n Cond395:Nitrogen_Depletion_30_min.\n Cond61:fks1(haploid)\n Cond214:yer034w\n Cond86:imp2'(**12)\n Cond131:rnh1\n Cond238:yml005w\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond113:pet111\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond74:hat2\n Cond716:t2+SSD1wt\n Cond918:1h\n Cond187:vac8\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond708:t0+SSD1\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond199:yea4\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond68:gas1\n Cond58:erp2\n Cond26:cka2\n Cond240:yml018c\n Cond69:gcn4\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond712:t4+SSD1\n Cond874:30min\n Y-Stre.Alkali:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond91:kim4\n Cond73:gyp1\n Cond374:1.5_mM_diamide_(50_min)\n Cond475:0.5x/1xAA(MildLeu,HisStarvation)(R176)\n Cond727:rpd3\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n Cond973:WT_vs_F82G_1\n Cond970:swi1,_minimal_(c)\n Cond160:sir4\n Cond423:YPD_stationary_phase_4_h_ypd-1\n Cond281:HMG2(tetpromoter)\n Cond368:dtt_480_min_dtt-2\n Cond292:Glucosamine\n Cond3:aep2\n Cond396:Nitrogen_Depletion_1_h\n Cond658:DES460_(wt)_-_mock_irradiation_-_5_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond763:Heat_60'\n Cond239:yml011c\n Cond585:cdc15_200\n Cond188:vma8\n Cond198:yar030c\n Cond263:ymr269w\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond15:bim1(**15)\n Cond249:ymr031c\n Cond516:rst1Drst2D/wtlog10(intensity)\n Cond669:mec1_plus_gamma_120_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond297:Nikkomycin\n Cond940:6h\n Cond109:pau2\n Cond36:cyc2\n Cond587:cdc15_220\n Cond261:ymr244c-a\n Cond934:8h\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond201:yel008w\n Cond340:constant_0.32_mM_H2O2_(60_min)_redo\n Cond935:10h\n Cond444:Msn2_overexpression_(repeat)\n Cond176:swi5\n Cond345:1_mM_Menadione_(10_min)redo\n Cond287:2-deoxy-D-glucose\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond87:isw1\n Cond215:yer041w\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond48:ecm29\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond465:steady_state_15_dec_C_ct-2\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond878:MNNG\n Cond17:bub1(haploid**2,10)\n Cond43:dot4\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond37:cyt1\n Cond906:(77i5)_S150-2B_YPD_NormInt\n Cond171:ste24(haploid)\n Cond42:dig2\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond175:swi4\n Cond98:mbp1\n Cond284:PMA1(tetpromoter)\n Cond153:sgs1\n Cond723:t2-SSD1,M31\n Cond398:Nitrogen_Depletion_4_h\n Cond294:Itraconazole\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond715:t0-SSD1\n Cond159:sir3\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond543:rst1Drst2Dtec1D/wtlog10(intensity)\n Cond295:Lovastatin\n Cond576:cdc15_110\n Cond299:Tunicamycin\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond339:constant_0.32_mM_H2O2_(50_min)_redo\n Cond186:utr4\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond35:cup5\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
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Computational Genomics Lab, Tel-Aviv uniresity