Module number 15




Database revision : gnsdb28.10
Date : Tue Feb 25 17:30:42 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n mYPL201C:Unknown ,, Unknown\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n mREG2:Possible regulatory subunit for the PP1 family protein phosp\nhatase Glc7p,,Null mutant is viable; reg1 reg2 double mutant\ns exhibit a severe growth defect (suppressed by loss-of-func\ntion mutation in snf1); overexpression of REG2 complements s\nlow-growth defect of a reg1 mutant but not the defects in gl\nycogen accumulation or glucose repression\n Cond698:gal3-gal\n Cond907:(83i1)_S150-2B_YPGL_NormInt\n Cond548:cln3-2\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Cond260:ymr237w\n Cond418:YPD_1_d_ypd-2\n mUIP4:Unknown ,, Unknown\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond697:gal2-gal\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mCYB2:Expression is repressed by glucose and anaerobic conditions,\n is induced by L-lactate and is regulated by GRR1, ROX3, HAP\n1, HXK2 and CYC8,L-lactate cytochrome c oxidoreductase , cyt\nochrome b2,Null mutant is viable but is deficient in cytochr\nome b2 and L-lactate dehydrogenase activity and is unable to\n use L-lactate as a sole carbon source\n Cond414:YPD_6_h_ypd-2\n Cond467:steady_state_21_dec_C_ct-2\n Cell Cycle.ko:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond416:YPD_10_h__ypd-2\n Cond447:ethanol_vs._reference_pool_car-1\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Cond911:(83i5)_S150-2B_YPD_NormInt\n Cond232:yhr034c\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mYGR067C:Unknown ,, Unknown\n Cond364:dtt_030_min__dtt-2\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond454:YP_fructose_vs_reference_pool_car-2\n mSFC1:succinate-fumarate carrier,succinate-fumarate transport prot\nein,\n mYKL187C:Unknown ,, Unknown\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond:\n Cond702:gal7-gal\n Cond696:gal1-gal\n Cond310:Heat_Shock_000_minutes_hs-2\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond457:YP_mannose_vs_reference_pool_car-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond318:37C_to_25C_shock_-_60_min\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond184:ubr1\n Cond119:ppr1\n Cond704:gal80-gal\n Cond705:gal1gal10+gal\n Cond64:fus2\n Cond701:gal6-gal\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond420:YPD_3_d_ypd-2\n Cond857:pm38-gtoe\n Cond404:Nitrogen_Depletion_5_d\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond449:glucose_vs._reference_pool_car-1\n Cond915:(99i4)_HBY4_YPGL_NormInt\n Cond689:gal3+gal\n mPCK1:phosphoenolpyruvate carboxylkinase,phosphoenolpyruvate carbo\nxylkinase,Null mutant is viable.\n Cond189:vps21\n Cond452:sucrose_vs._reference_pool_car-1\n mYHL037C:Unknown ,, Unknown\n Cond693:gal7+gal\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond694:gal10+gal\n Cond430:YPD_stationary_phase_7_d_ypd-1\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n Cond871:yhe710-ss\n Cond419:YPD_2_d_ypd-2\n Cond451:raffinose_vs._reference_pool_car-1\n Cond700:gal5-gal\n Cond844:expt7\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond625:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y12-121\n Cond688:gal2+gal\n Cond456:YP_glucose_vs_reference_pool_car-2\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond692:gal6+gal\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n mYLR312C:Unknown ,, Unknown\n mJEN1:Repressed by glucose, induced by lactic acid; in high copy, \nweakly suppresses cpr3 null mutan phenotype on lactate mediu\nm at 37 degrees,carboxylic acid transporter protein homolog,\ndeletion results in slow growth of yeast in synthetic medium\n supplemented with L-lactate and synergistic with cpr3 null \nmutation; essential for lactate uptake in yeast\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n mALD4:Glucose repressed. Utilizes NADP+ or NAD+ as a coenzyme equa\nlly well. (sold by SIGMA under the catalogue number A5550, a\nccording to A. Blomberg).,aldehyde dehydrogenase,\n mPRM6:pheromone-regulated membrane protein,,\n Cond58:erp2\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond417:YPD_12_h_ypd-2\n mHSP30:Protein induced by heat shock, ethanol treatment, and entry \ninto stationary phase; located in plasma membrane,,\n Cond52:erd1\n Cond42:dig2\n mSEO1:Suppressor of Sulfoxyde Ethionine resistance,permease (putat\nive),\n Cond240:yml018c\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond415:YPD_8_h_ypd-2\n mFBP1:fructose-1,6-bisphosphatase,fructose-1,6-bisphosphatase,unab\nle to grow with ethanol\n Cond685:wt-gal\n mYGL146C:Unknown ,, Unknown\n Cond687:gal1+gal\n Cond182:tup1(haploid)\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond942:SK1ume6_YPD\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mPUT4:putative proline-specific permease,proline-specific permease\n (putative),inability to use proline as a nitrogen source\n Cond411:diauxic_shift_timecourse_20.5_h\n mYIL057C:Unknown ,, Unknown\n mIDP2:concerts isocitrate and NADP+ to 2-oxoglutarate, CO2, and NA\nDPH,NADP-dependent isocitrate dehydrogenase,Null mutant is v\niable\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond845:expt8\n Cond690:gal4+gal\n Cond699:gal4-gal\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond503:wtħ50nMaF,60minlog10(intensity)\n mYNL195C:Unknown ,, Unknown\n mPFS1:Prospore Formation at Selected spindle poles,,Null mutant is\n viable; homozygous null diploid accumulates nonsister-spore\n dyads, normal meiotic spindles\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Cond421:YPD_5_d_ypd-2\n mYGR226C:Unknown ,, Unknown\n mMLS1:carbon-catabolite sensitive malate synthase,carbon-catabolit\ne sensitive malate synthase,Null mutant is viable\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond703:gal10-gal\n
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Computational Genomics Lab, Tel-Aviv uniresity