Module number 142




Database revision : gnsdb28.10
Date : Tue Feb 25 17:24:56 2003
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Cond498:wtħ500nMaF,30minlog10(intensity)\n Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond458:YP_raffinose_vs_reference_pool_car-2\n Cond529:bni1D/wtlog10(intensity)\n Cond744: Cond649:dun1-_+_0.02%_MMS_-_120_min\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n mFET3:FET3 encodes a ferro-O2-oxidoreductase that is part of the h\nigh-affinity iron transport system,multicopper oxidase,The n\null mutant is viable but defective for high affinity Fe(II) \nuptake. The null mutant is inviable when environmental iron \nis limiting.\n Cond13:ase1(**12)\n Cond95:mac1\n Cond121:qcr2(haploid)\n Cond657:wt_plus_gamma_120_min\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond630:DY_zap1_3_mM_vs._76_nM_zinc_y12-124\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond702:gal7-gal\n Cond23:cbp2\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond486:PHO4c_vs_WT\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond166:ste11(haploid)\n Cond530:GAL-BNI1D,3hrs.gallog10(intensity)\n Cond155:she4\n Cond689:gal3+gal\n Cond216:yer044c(haploid)\n Cond246:ymr025w\n Cond524:ste5D/wtlog10(intensity)\n Cond194:yap1\n Cond207:yel047c\n Cond700:gal5-gal\n Cond88:isw1,isw2\n Cond572:cdc15_70\n Cond963:t11.5_g/r_ratio\n Cond949:WT1val\n Cond662:mec1_plus_gamma_5_min\n Cond52:erd1\n Cond9:ard1\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond16:bni1(haploid)\n Cond746: Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond653:wt_plus_gamma_30_min\n Cond687:gal1+gal\n mENB1:Siderophore transporter for enterobactin; AFT1 regulon,enter\nobactin transporter,Null mutants are viable but are unable t\no take up and utilize iron from enterobactin\n Cond706:gal2gal80-gal\n Cond571:cdc15_50\n Cond778:msn2/4_acid_10'\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Cond942:SK1ume6_YPD\n Cond25:cin5\n Cond21:bul1\n Cond969:swi1,_minimal_(a)\n Cond737: Cond461:21_deg_growth_ct-1\n Cond555:alpha28\n Cond126:ras1(haploid)\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond659:DES460_(wt)_-_mock_irradiation_-_30_min\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond960:t5_g/r_ratio\n mARN1:Product of gene unknown,,\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond639:DES460_+_0.02%_MMS_-_120_min\n mARN2:Siderophore transporter for triacetylfusarinine C,triacetylf\nusarinine C transporter,YHL047c disrupted cells are unable t\no take up and utilize iron from triacetylfusarinine C und fu\nsigen\n Cond441:DBYmsn2/4_(real_strain)_+_0.32_mM_H2O2_(20_min)\n Cond842:expt5\n Cond408:diauxic_shift_timecourse_13.5_h\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond101:mrpl33\n Cond136:rpl27a(**4)\n Cond462:25_deg_growth_ct-1\n Cond130:rml2(**13)\n Cond954:TPK2_MT2val\n TPK.TPK:The yeast A kinases differentially regulate iron uptake and \nrespiratory function. Proc Natl Acad Sci U S A. 2000 May 23\n;97(11):5984-8.\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n Cond971:swi1,_minimal_(d)_\n Cond280:FKS1(tetpromoter)\n Cond561:alpha70\n Y-Stre.msn2/4acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond729:sin3\n Cond125:ras1\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond656:wt_plus_gamma_90_min\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond764:Heat_120'\n Cond298:Terbinafine\n Cond705:gal1gal10+gal\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond180:top1(haploid)\n Cond85:imp2\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond983:WT_vs_pho85D\n Cond229:yhr011w(**14)\n Cond387:Hypo-osmotic_shock_-_45_min\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond290:Doxycycline\n Cond625:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y12-121\n Cond139:rpl8a\n Cond149:sap30\n Cond197:yar014c\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond24:cem1\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond62:fpr1\n Cond250:ymr031w-a\n Cond349:1_mM_Menadione_(50_min)redo\n Cond738:90\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond575:cdc15_100\n Cond743: Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n Cond534:tec1D+50nMaF/wt+50nMaF,30minlog10(intensity)\n Cond324:heat_shock_33_to_37,_20_minutes\n Cond167:ste12(haploid)\n Cond129:rip1\n Cond103:msu1\n Cond265:ymr293c\n Cond747: Cond497:wtħ158nMaF,30minlog10(intensity)\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond559:alpha56\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond962:t9_g/r_ratio\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond703:gal10-gal\n Cond939:4h\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond217:yer050c\n Cond663:mec1_plus_gamma_10_min\n Cond221:yer083c\n Cond565:alpha98\n Cond388:Hypo-osmotic_shock_-_60_min\n Cond950:TPK1_MT1val\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond761:Heat_30'\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Cond4:afg3(haploid)\n Cond556:alpha35\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond232:yhr034c\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond122:rad27\n Cond696:gal1-gal\n Cond562:alpha77\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond267:yor006c\n Cond245:ymr014w\n Cond568:alpha119\n Cond184:ubr1\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond335:constant_0.32_mM_H2O2_(10_min)_redo\n Cond704:gal80-gal\n Cond279:ERG11(tetpromoter)\n Cond553:alpha14\n Cond61:fks1(haploid)\n Cond181:top3(haploid)\n Cond59:erp4\n Cond113:pet111\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond367:dtt_240_min_dtt-2\n Cond145:rts1\n Cond688:gal2+gal\n Cond68:gas1\n Cond20:bub3(haploid**2)\n Cond26:cka2\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond80:hmg1(haploid)\n Cond91:kim4\n Cond951:WT2val\n Cond475:0.5x/1xAA(MildLeu,HisStarvation)(R176)\n Cond282:IDI1(tetpromoter)\n Cond499:wtħ50nMaF,0minlog10(intensity)\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond821:tlc1_Expt.1_Passage_2\n Cond952:TPK1_MT2val\n Cond366:dtt_120_min_dtt-2\n Cond173:ste5(haploid)\n Cond511:GAL-STE4,3hrs.gallog10(intensity)\n Cond567:alpha112\n Cond526:ste11D/wtlog10(intensity)\n Cond652:wt_plus_gamma_20_min\n Cond664:mec1_plus_gamma_20_min\n Cond368:dtt_480_min_dtt-2\n Cond281:HMG2(tetpromoter)\n Cond3:aep2\n Cond464:37_deg_growth_ct-1\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond552:alpha7\n mSIT1:Siderophore Iron Transport,ferrioxamine B permease,Viable. C\nells deleted from the gene are unable to take up ferrioxamin\ne B\n Cond89:isw2\n Cond654:wt_plus_gamma_45_min\n Cond585:cdc15_200\n Cond188:vma8\n Cond263:ymr269w\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n mFTR1:Plasma membrane iron permease,iron permease,Lacks high affin\nity iron uptake\n Cond140:rps24a(**9)\n mFIT2:Facilitator of iron transport,Cell wall protein involved in \niron transport,impaired siderophore-iron uptake, activation \nof the major iron -dependent transcription factor, AFT1\n mFIT3:Facilitator of Iron Transport,Cell wall protein involved in \niron transport,impaired siderophore iron uptake, activation \nof the major iron-dependent transcription factor, AFT1\n Cond15:bim1(**15)\n Cond447:ethanol_vs._reference_pool_car-1\n Cond386:Hypo-osmotic_shock_-_30_min\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond733: Cond940:6h\n Cond109:pau2\n Cond179:tom6\n Cond457:YP_mannose_vs_reference_pool_car-2\n Cond587:cdc15_220\n Cond346:1_mM_Menadione_(20_min)_redo\n Cond531:GAL-PKC1-R398A,3hrs.gallog10(intensity)\n Cond956:TPK3_MT2val\n Cond937:t=0\n Cond934:8h\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond961:t7_g/r_ratio\n Cond341:constant_0.32_mM_H2O2_(80_min)_redo\n Cond515:far1Dħ50nMaF,30minlog10(intensity)\n Cond271:yor051c(**14)\n Cond273:yor078w\n Cond87:isw1\n Cond629:DY_(zap1)_3_mM_vs._61_nM_zinc_y13-76\n Cond215:yer041w\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond589:cdc15_240\n Cond844:expt7\n Cond783:Peroxide_60'\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond762:Heat_45'\n Cond43:dot4\n Cond456:YP_glucose_vs_reference_pool_car-2\n Cond502:wtħ50nMaF,45minlog10(intensity)\n Cond460:17_deg_growth_ct-1\n Cond563:alpha84\n Cond527:ste12D/wtlog10(intensity)\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond132:rnr1(haploid**9)\n Cond37:cyt1\n Cond134:rpl12a\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond779:msn2/4_acid_20'\n Cond766:Acid_20'\n Cond554:alpha21\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond348:1mM_Menadione_(40_min)_redo\n Cond560:alpha63\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond35:cup5\n Cond655:wt_plus_gamma_60_min\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond551:alpha0\n Cond665:mec1_plus_gamma_30_min\n Cond953:TPK2_MT1val\n
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Computational Genomics Lab, Tel-Aviv uniresity