Module number 1273




Database revision : gnsdb28.10
Date : Tue Feb 25 17:04:23 2003
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Cond72:gpa2\n Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond796:Ca5'\n Cond826:tlc1_Expt.1_Passage_7\n Cond399:Nitrogen_Depletion_8_h\n Cond798:Ca30'\n Cond104:npr2\n Cond410:diauxic_shift_timecourse_18.5_h\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond121:qcr2(haploid)\n Cond675:MHY1_(dun1)_+_heat_20_min\n Cond13:ase1(**12)\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond400:Nitrogen_Depletion_12_h\n Cond735: Cond834:tlc1_Expt.2_Passage_6\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond416:YPD_10_h__ypd-2\n Cond810:Na45'\n Cond289:Cycloheximide\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond439:DBY7286_+_0.3_mM_H2O2_(20_min)\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n Cond311:Heat_Shock_005_minutes_hs-2\n Cond231:yhr031c\n Cond50:ecm34\n Cond673:DES460_(wild_type)_+_heat_20_min\n Cond155:she4\n Cond312:Heat_Shock_015_minutes_hs-2\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond683:MHY1_(crt1)_vs._CRY1_(wild_type)_-_log_phase\n Cond508:bni1Dą50nMaF,120minlog10(intensity)\n Cond849:120_min\n Cond825:tlc1_Expt.1_Passage_6\n mYNL274C:Unknown ,, Unknown\n Cond972:anc1\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond662:mec1_plus_gamma_5_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond16:bni1(haploid)\n Cond945:W303_YPD\n Cond819:crz1/Na45'_\n Cond746: Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond653:wt_plus_gamma_30_min\n Cond314:Heat_Shock_060_minutes__hs-2\n Cond833:tlc1_Expt.2_Passage_5\n Cond706:gal2gal80-gal\n Cond370:1.5_mM_diamide_(10_min)\n SSD1.ANC1: Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond177:swi6(haploid)\n Cond461:21_deg_growth_ct-1\n Cond303:Heat_Shock_20_minutes_hs-1\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond564:alpha91\n Cond408:diauxic_shift_timecourse_13.5_h\n Cond438:DBYyap1_+_37degree_heat_(repeat)\n Cond801:CaFK15'\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond332:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_5_minutes\n Cond455:YP_galactose_vs_reference_pool_car-2\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond136:rpl27a(**4)\n Cond316:37C_to_25C_shock_-_30_min\n Cond462:25_deg_growth_ct-1\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond301:Heat_Shock_10_minutes_hs-1\n Cond982:pho85D_10_mM_1NaPP1_\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n Cond224:CMD1(tetpromoter)\n Cond800:CaFK5'\n Cond190:vps8\n Cond31:cmk2\n Cond729:sin3\n Cond2:ade2(haploid)\n Cond19:bub3(**2,8,13)\n Cond112:pep12\n Cond371:1.5_mM_diamide_(20_min)\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond286:YEF3(tetpromoter)\n Cond651:wt_plus_gamma_10_min\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond326:29C_to_33C_-_15_minutes\n Cond855:pm38-30\n Cond748: Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond459:YP_sucrose_vs_reference_pool_car-2\n mYBR053C:Unknown ,, Unknown\n Cond180:top1(haploid)\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond229:yhr011w(**14)\n Cond387:Hypo-osmotic_shock_-_45_min\n Cond449:glucose_vs._reference_pool_car-1\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond317:37C_to_25C_shock_-_45_min\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond419:YPD_2_d_ypd-2\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond290:Doxycycline\n Cond625:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y12-121\n Cond139:rpl8a\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond24:cem1\n Cond838:expt1\n Cond803:CaFK60'\n mYGP1:may be involved in cellular adaptations prior to stationary \nphase,gp37, a glycoprotein synthesized in response to nutrie\nnt limitation which is homologous to the sporulation-specifi\nc SPS100 gene,\n Cond823:tlc1_Expt.1_Passage_4\n Cond811:Na60'\n Cond372:1.5_mM_diamide_(30_min)\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n Cond743: Cond707:gal4gal80-gal\n Cond324:heat_shock_33_to_37,_20_minutes\n Cond327:29C_to_33C_-_30_minutes\n Cond380:1M_sorbitol_-_45_min_\n Cond831:tlc1_Expt.2_Passage_3\n Cond815:Na+FK60'\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond383:1M_sorbitol_-_120_min\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cond274:yor080w(**3)\n Cond559:alpha56\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond962:t9_g/r_ratio\n Cond979:WT_10_mM_1NaPP1\n Cond307:Heat_Shock_80_minutes_hs-1\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond939:4h\n Cond330:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_15_minutes\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond217:yer050c\n Cond663:mec1_plus_gamma_10_min\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond141:rps24a(haploid)\n mTFS1:(putative) lipid binding protein; supressor of a cdc25 mutat\nion,lipid binding protein (putative) , supressor of a cdc25 \nmutation,Null mutant is viable.\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond388:Hypo-osmotic_shock_-_60_min\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n mYNL200C:Unknown ,, Unknown\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond513:GAL-STE11-4,3hrs.gallog10(intensity)\n Cond4:afg3(haploid)\n mPBI2:Proteinase inhibitor that inhibits protease Prb1p (yscB),pro\nteinase inhibitor I2B (PBI2),Null mutant is viable but shows\n 50% elevation of protein degradation rate when cells are su\nbject to nutritional stress\n Cond467:steady_state_21_dec_C_ct-2\n Cond674:DES459_(mec1)_+_heat_20_min\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond911:(83i5)_S150-2B_YPD_NormInt\n Cond232:yhr034c\n Cond364:dtt_030_min__dtt-2\n Cond373:1.5_mM_diamide_(40_min)\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond445:Msn4_overexpression\n Cond822:tlc1_Expt.1_Passage_3\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond802:CaFK30'\n Cond142:rps27b(**11)\n mGAD1:glutamate decarboxylase,glutamate decarboxylase,\n Cond300:Heat_Shock_05_minutes_hs-1\n Cond814:Na+FK45'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n mARC35:Arp complex subunit,,Null mutant is viable, but exhibits sev\nere growth defects\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond267:yor006c\n Cond245:ymr014w\n Cond376:1.5_mM_diamide_(90_min)\n Cond752: Cond553:alpha14\n Cond910:(83i4)_S150-2B_YPGL+G_NormInt\n Cond59:erp4\n Cond852:30_min\n Cond86:imp2'(**12)\n Cond452:sucrose_vs._reference_pool_car-1\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond694:gal10+gal\n Cond797:Ca15'\n Cond361:2.5mM_DTT_180_min_dtt-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond367:dtt_240_min_dtt-2\n Cond145:rts1\n Cond187:vac8\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond818:crz1/Na30'\n Cond26:cka2\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond413:YPD_4_h_ypd-2\n Cond874:30min\n Cond27:ckb2\n Cond394:aa_starv_6_h\n Cond374:1.5_mM_diamide_(50_min)\n Cond475:0.5x/1xAA(MildLeu,HisStarvation)(R176)\n Cond325:29C_to_33C_-_5_minutes\n Cond282:IDI1(tetpromoter)\n Cond859:ms221-30\n Cond366:dtt_120_min_dtt-2\n Cond828:tlc1_Expt.1_Passage_9\n Cond690:gal4+gal\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond650:wt_plus_gamma_5_min\n Cond160:sir4\n Cond135:rpl20a\n Cond837:tlc1_Expt.2_Passage_9__\n Cond652:wt_plus_gamma_20_min\n Cond464:37_deg_growth_ct-1\n Cond3:aep2\n Cond836:tlc1_Expt.2_Passage_8\n Cond305:Heat_Shock_40_minutes_hs-1\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond369:1.5_mM_diamide_(5_min)\n Cond363:dtt_015_min_dtt-2\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond331:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_30_minutes\n Cond447:ethanol_vs._reference_pool_car-1\n Cond15:bim1(**15)\n Cond386:Hypo-osmotic_shock_-_30_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond375:1.5_mM_diamide_(60_min)\n Cond323:heat_shock_29_to_37,_20_minutes\n Cond733: Cond457:YP_mannose_vs_reference_pool_car-2\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond344:constant_0.32_mM_H2O2_(160_min)_redo\n Cond759:Heat_0'_(B)\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n Cond961:t7_g/r_ratio\n Cond341:constant_0.32_mM_H2O2_(80_min)_redo\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond827:tlc1_Expt.1_Passage_8\n mHSP26:heat shock protein 26,heat shock protein 26,Null mutant is v\niable; hsp26 hsp42 double deletion mutants are viable\n Cond340:constant_0.32_mM_H2O2_(60_min)_redo\n Cond379:1M_sorbitol_-_30_min\n Cond151:sbp1\n Cond444:Msn2_overexpression_(repeat)\n mOPI3:Second and third steps of methylation pathway for phosphatid\nylcholine biosynthesis,methylene-fatty-acyl-phospholipid syn\nthase (unsaturated phospholipid N-methyltransferase),Null mu\ntant is viable, temperature sensitive in the presence of mon\nomethylethanolamine, exhibits an inositol secretion phenotyp\ne\n Cond758:Heat_0'_(A)\n Cond271:yor051c(**14)\n Cond176:swi5\n Cond273:yor078w\n Cond287:2-deoxy-D-glucose\n Cond434:DBY7286_37degree_heat_-_20_min\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond450:mannose_vs._reference_pool__car-1\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond478:WT+/-10mM3AT(R491)\n Cond871:yhe710-ss\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond144:rtg1\n Cond783:Peroxide_60'\n Cond17:bub1(haploid**2,10)\n Cond333:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_15_minutes\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond456:YP_glucose_vs_reference_pool_car-2\n Cond835:tlc1_Expt.2_Passage_7\n Cond877:MMS\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond417:YPD_12_h_ypd-2\n Cond171:ste24(haploid)\n Cond117:pfd2(**14)\n Cond799:Ca60'\n Cond342:constant_0.32_mM_H2O2_(100_min)_redo\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond319:37C_to_25C_shock_-_90_min\n Cond554:alpha21\n Cond876:zero2\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond51:eft2\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond339:constant_0.32_mM_H2O2_(50_min)_redo\n Cond133:rpd3(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond858:pm71-30\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
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Computational Genomics Lab, Tel-Aviv uniresity