Module number 1179




Database revision : gnsdb28.10
Date : Tue Feb 25 17:01:56 2003
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Cond626:DY1457_(wild_type)_3_mM_vs._61_nM_zinc_y13-121\n Cond912:(99i1)_S150-2B_YPGL_NormInt\n Cond399:Nitrogen_Depletion_8_h\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response. Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond675:MHY1_(dun1)_+_heat_20_min\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond362:dtt_000_min__dtt-2\n Cond400:Nitrogen_Depletion_12_h\n Cond697:gal2-gal\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond416:YPD_10_h__ypd-2\n Cond810:Na45'\n Calcin.NaNa:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n mRPS8A:Homology to mammalian S8,ribosomal protein S8A (S14A) (rp19)\n (YS9),\n Cond890:G1\n Cond702:gal7-gal\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n mRPP2B:Homology to rat P2, human P2, and E.coli L12eIA,ribosomal pr\notein P2B (YP2beta) (L45),Null mutant is viable\n Cond318:37C_to_25C_shock_-_60_min\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond673:DES460_(wild_type)_+_heat_20_min\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond312:Heat_Shock_015_minutes_hs-2\n Cond683:MHY1_(crt1)_vs._CRY1_(wild_type)_-_log_phase\n Cond689:gal3+gal\n Cond693:gal7+gal\n Cond849:120_min\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mRPS9A:Homology to rat S9 and E.coli S4,ribosomal protein S9A (S13)\n (rp21) (YS11),\n Cond700:gal5-gal\n Cond879:MMC\n Cond427:YPD_stationary_phase_2_d_ypd-1\n mRPS16B:Homology to rat S16,ribosomal protein S16B (rp61R),\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond746: Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond653:wt_plus_gamma_30_min\n Cond687:gal1+gal\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond969:swi1,_minimal_(a)\n Cond942:SK1ume6_YPD\n Cond742: Cond881:4NQO\n mRPL3:Homology to rat L3,ribosomal protein L3 (rp1) (YL1),Tricoder\nmin resistance\n Cond813:Na+FK30'\n Cond303:Heat_Shock_20_minutes_hs-1\n mRPL5:Homology to rat ribosomal protein L5; required for assembly \nof stable 60S ribosomal subunits,ribosomal protein L5 (L1a)(\nYL3),Null mutant is inviable.\n mRPS24A:Homology to rat S24,ribosomal protein S24A,\n Cond960:t5_g/r_ratio\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond438:DBYyap1_+_37degree_heat_(repeat)\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond397:Nitrogen_Depletion_2_h\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond316:37C_to_25C_shock_-_30_min\n Cond982:pho85D_10_mM_1NaPP1_\n Cond887:t-BuOOH\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n mRPS25A:Homology to rat S25,ribosomal protein S25A (S31A) (rp45) (YS\n23),\n mRPS25B:Homology to rat S25; belongs to the S25E family of ribosomal\n proteins,ribosomal protein S25B (S31B) (rp45) (YS23),\n mRPS18B:Homology to rat S18 and E. coli S13,ribosomal protein S18B,\n mRPA49:49-kDa alpha subunit of RNA polymerase A,RNA polymerase A 49\n kDa alpha subunit,Null mutant is viable but grows slowly an\nd is temperature or cold sensitive; synthetically lethal wit\nh RPA14\n Cond745: Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond880:BCNU\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond651:wt_plus_gamma_10_min\n Cond872:Zero1\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond532:GAL-RHO1-Q68H,3hrs.gallog10(intensity)\n mRPL21A:Homology to rat L21,ribosomal protein L21A,\n Cond459:YP_sucrose_vs_reference_pool_car-2\n mRPS26A:Homology to rat S26,ribosomal protein S26A,Null mutant is vi\nable and grows slowly\n Cond857:pm38-gtoe\n mRPS19A:Homology to rat S19,ribosomal protein S19A (S16aA) (rp55A) (\nYS16A),\n mRPS19B:Homology to rat S19,ribosomal protein S19B (rp55B) (S16aB) (\nYS16B),\n Cond229:yhr011w(**14)\n Cond387:Hypo-osmotic_shock_-_45_min\n mYEF3:contains two ABC cassettes, and binds and hydrolyses ATP,Tra\nnslation elongation factor 3 (EF-3),Null mutant is inviable\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond317:37C_to_25C_shock_-_45_min\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins. Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond419:YPD_2_d_ypd-2\n Cond431:YPD_stationary_phase_13_d_ypd-1\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n mRPL22A:Homology to rat L22,ribosomal protein L22A (L1c) (rp4) (YL31\n),\n Cond886:g-ray\n Cond811:Na60'\n mYLR076C:Unknown ,, Unknown\n Cond372:1.5_mM_diamide_(30_min)\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond743: Cond401:Nitrogen_Depletion_1_d\n mRPL4A:Homology to rat L4, Xenopus L1, Drosophila L1,ribosomal prot\nein L4A (L2A) (rp2) (YL2),\n mRPL4B:Highly similar to ribosomal protein L4A,ribosomal protein L4\nB (L2B) (rp2) (YL2),\n Cond265:ymr293c\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond815:Na+FK60'\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond968:swi1,_YPD_(d)\n mRPL23A:Homology to E. coli L14 and rat L23,ribosomal protein L23A (\nL17aA) (YL32),\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n mRPL16A:Homology to rat L13a,ribosomal protein L16A (L21A) (rp22) (Y\nL15),\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n mRPS28A:Homology to mammalian S28,ribosomal protein S28A (S33A) (YS2\n7),\n Cond307:Heat_Shock_80_minutes_hs-1\n Cond962:t9_g/r_ratio\n mRPS28B:Homology to mammalian S28,ribosomal protein S28B (S33B) (YS2\n7),\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond939:4h\n Cond958:t0.5_g/r_ratio\n Cond703:gal10-gal\n Cond436:DBYmsn2/4_(real_strain)_+_37degrees_(20_min)\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function. J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Cond698:gal3-gal\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond388:Hypo-osmotic_shock_-_60_min\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n mRPS0A:Homology to rat Sa,ribosomal protein S0A,Null mutant is viab\nle; yst1 (rps0a) yst2 (rps0b) double deletion mutant is invi\nable; yst1 (rps0a) mutants are defective for filamentous gro\nwth\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mRPL24A:Homology to rat L24,ribosomal protein L24A (rp29) (YL21) (L3\n0A),Null mutant is viable.\n Cond467:steady_state_21_dec_C_ct-2\n mRPS29A:Homology to rat S29,ribosomal protein S29A (S36A) (YS29),\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Cond674:DES459_(mec1)_+_heat_20_min\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond364:dtt_030_min__dtt-2\n Cond373:1.5_mM_diamide_(40_min)\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond445:Msn4_overexpression\n mRPS15:Homology to rat S15 and E. coli S19,ribosomal protein S15 (S\n21) (rp52) (RIG protein),\n Cond391:aa_starv_1_h\n mRPL6A:Homology to rat L6 and human L6,ribosomal protein L6A (L17A)\n (rp18) (YL16),\n Cond814:Na+FK45'\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond677:DES459_(mec1)_-_log_phase_(IR_time_=_0_sample)\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond894:G2\n Cond900:(11i1)_S150-2B_YPGL_NormInt\n Cond395:Nitrogen_Depletion_30_min.\n Cond704:gal80-gal\n Cond279:ERG11(tetpromoter)\n Cond701:gal6-gal\n mRPL18A:Homology to rat ribosomal protein L18,ribosomal protein L18A\n (rp28A),\n Cond749: mRPL18B:Homology to rat ribosomal protein L18,ribosomal protein L18B\n (rp28B),\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond694:gal10+gal\n Cond361:2.5mM_DTT_180_min_dtt-1\n Cond367:dtt_240_min_dtt-2\n Cond848:90_min\n mRPL7A:Homology to rat L7 and E. coli L30,ribosomal protein L7A (L6\nA) (rp11) (YL8),Null mutant is viable; grows more slowly tha\nn wild-type\n mYGL102C:Unknown ,, Unknown\n mRPL7B:Homolog of mammalian ribosomal protein L7 and E. coli L30,ri\nbosomal protein L7B (L6B) (rp11) (YL8),Null mutant is viable\n; disruption of both RPL7A and RPL7B is lethal\n Cond313:Heat_Shock_030inutes__hs-2\n Cond688:gal2+gal\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond481:WT+/-100mM3AT(SetB)(491)\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond818:crz1/Na30'\n Cond378:1M_sorbitol_-_15_min\n Cond816:Na/Na+FK30'\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mRPS5:ribosomal small subunit protein homologous to mammalian S5 (\nhas approx. 70% identity with human, rat and hydrozoan S5). \nIt is the least basic of the non-acidic ribosomal proteins. \nIt is phosphorylated in yeast.,ribosomal protein S5 (S2) (rp\n14) (YS8),null is inviable; transcription of RPS5 is sensiti\nve to heat-shock and carbon source shift.\n Cond374:1.5_mM_diamide_(50_min)\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond959:t2_g/r_ratio\n Cond809:Na30'\n Cond965:ndt80_delete_mid_g/r_ratio_\n mRPL8A:Homolgous to human L7a, mouse L7a, and rat L7a,ribosomal pro\ntein L8A (rp6) (YL5) (L4A),Null mutant is viable, rpl4A rpl4\nB double mutant is inviable; deficient in maintenance of kil\nler\n Cond905:(77i4)_S150-2B_YPGL+G__NormInt\n mRPL8B:Homology to human L7a, mouse L7a, rat L7a,ribosomal protein \nL8B (L4B) (rp6) (YL5),Null mutant is viable. rpl8a rpl8b mut\nants are inviable. The rpl8b allele, krb1, can suppress some\n mak mutations and represents a chromosomal rearrangement in\nvolving chromosome XII\n Cond366:dtt_120_min_dtt-2\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n mRPL34A:Homology to rat L34,ribosomal protein L34A,\n mRPL27B:Homology to mammalian L27,ribosomal protein L27B,\n Cond839:expt2\n Cond652:wt_plus_gamma_20_min\n Cond281:HMG2(tetpromoter)\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond396:Nitrogen_Depletion_1_h\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n mRPL9B:Homology to rat L9,ribosomal protein L9B (L8B) (rp24) (YL11)\n,\n Cond654:wt_plus_gamma_45_min\n Cond363:dtt_015_min_dtt-2\n mRPL42B:Homology to rat L36a and human L36a,ribosomal protein L42B (\nYL27) (L41B) (YP44),Deficient in maintenance of killer\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond892:S\n Cond447:ethanol_vs._reference_pool_car-1\n Cond967:swi1,_YPD_(c)\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond323:heat_shock_29_to_37,_20_minutes\n Cond733: Cond940:6h\n mRPS11A:Homology to rat S11, human S11, and E. coli S17,ribosomal pr\notein S11A (S18A) (rp41A) (YS12),Null mutant is viable\n mRPS11B:Homology to rat S11, human S11, and E. coli S17,ribosomal pr\notein S11B (S18B) (rp41B) (YS12),Null mutant is viable\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond531:GAL-PKC1-R398A,3hrs.gallog10(intensity)\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n Cond961:t7_g/r_ratio\n Cond420:YPD_3_d_ypd-2\n Cond893:SMMS\n mRPL43A:Homology to human L37a,ribosomal protein L43A,\n Cond466:steady_state_17_dec_C_ct-2\n Cond379:1M_sorbitol_-_30_min\n Cond354:2.5mM_DTT_005_min_dtt-1\n Cond434:DBY7286_37degree_heat_-_20_min\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond783:Peroxide_60'\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n Science. 1998 Oct 23;282(5389):699-705.\n Cond906:(77i5)_S150-2B_YPD_NormInt\n Cond417:YPD_12_h_ypd-2\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond319:37C_to_25C_shock_-_90_min\n Cond685:wt-gal\n Cond402:Nitrogen_Depletion_2_d\n mRPL37A:Homology to rat L37,ribosomal protein L37A (L43) (YL35),\n Cond876:zero2\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond732:fkh1,2_alpha_factor_000_min_y12n57\n Cond360:2.5mM_DTT_120_min_dtt-1\n Cond885:20\n Cond411:diauxic_shift_timecourse_20.5_h\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond699:gal4-gal\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond339:constant_0.32_mM_H2O2_(50_min)_redo\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond421:YPD_5_d_ypd-2\n Cond858:pm71-30\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
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Computational Genomics Lab, Tel-Aviv uniresity