Module number 724




Database revision : gnsdb28.10
Date : Tue Feb 25 17:02:36 2003
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Cond663:mec1_plus_gamma_10_min\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes. Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond136:rpl27a(**4)\n Cond338:constant_0.32_mM_H2O2_(40_min)_rescan\n Cond578:cdc15_130\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts. Nat Genet\n. 2000 Dec;26(4):415-23.\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns. J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond185:ubr2\n Cond353:1_mM_Menadione_(160_min)_redo\n Cond519:rst1Drst2Dħ50nMaF,30minlog10(intensity)\n Cond289:Cycloheximide\n Calcin.NaNa:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt. Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond772:Alkali_20'\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond940:6h\n Cond486:PHO4c_vs_WT\n Cond873:10min\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles. Science. 200\n0 Feb 4;287(5454):873-80\n Cond788:NaCl_60'\n mPEP3:vacuolar membrane protein,vacuolar membrane protein,Null mut\nant is viable, exhibits growth defects at 37 degrees celsius\n, exhibits vacuolar protein sorting and processing and defec\nts, exhibits decreased levels of protease A, protease B, and\n carboxylpeptidase Y antigens; decreased repressible alkalin\ne phosphatase activity; null mutants contain very few normal\n vacuolelike organelles; homozygous null mutants are sporula\ntion defective\n Cond677:DES459_(mec1)_-_log_phase_(IR_time_=_0_sample)\n Cond786:NaCl_30'\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond900:(11i1)_S150-2B_YPGL_NormInt\n Cond934:8h\n mSAC2:May interact with actin as a component or controller of the \nassembly or stability of the actin cytoskeleton,,Null mutant\n is viable, cold-sensitive growth phenotype, suppressor of a\nctin mutation; aberrant organization of intracellular actin \nand deposition of chitin at the cell surface\n Cond789:NaCl_120'\n Cond773:Alkali_40'\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond588:cdc15_230\n Cond935:10h\n Cond749: Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Cond758:Heat_0'_(A)\n Cond356:2.5mM_DTT_030_min_dtt-1\n Cond678:DES459_(mec1)_-_log_phase_(MMS_time_=_0_sample)\n Cond506:bni1Dħ50nMaF,60minlog10(intensity)\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond936:12h\n Cond589:cdc15_240\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond484:Low-Pi_vs_High-Pi_in_WT_(NBW7)_exp2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond774:Alkali_60'\n mSEC10:100 kD component of the Exocyst complex; required for exocyt\nosis. The Exocyst complex contains the gene products encoded\n by SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70.,exocyst \ncomplex 100 kDa component,Null is inviable\n Cond767:Acid_40'\n Cond278:CDC42(tetpromoter)\n Cond918:1h\n Y-Stre.NaCl:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond313:Heat_Shock_030inutes__hs-2\n Cond688:gal2+gal\n Cond502:wtħ50nMaF,45minlog10(intensity)\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n Cond692:gal6+gal\n Cond784:Peroxide_120'\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network. Science. 2001 May 4;292(5518\n):929-34.\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond170:ste20(**11)\n Cond803:CaFK60'\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Y-Stre.Sorbitol:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond816:Na/Na+FK30'\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond775:Alkali_80'\n Cond108:pac2\n Cond582:cdc15_170\n Cond250:ymr031w-a\n Y-Stre.Alkali:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond73:gyp1\n Cond876:zero2\n Cond446:YAP1_overexpression\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis. Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond327:29C_to_33C_-_30_minutes\n Cond821:tlc1_Expt.1_Passage_2\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes. Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond813:Na+FK30'\n Cond237:yml003w\n Cond771:Alkali_10'\n Cond253:ymr041c\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion. Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond473:WT+/-MMS(DBY747)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n. J Biol Chem. 2002 Aug 23;277(34):31079-88\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes. Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond655:wt_plus_gamma_60_min\n Cond521:fus3-K42Dħ50nMaF,30minlog10(intensity)\n Cond750: fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth. Nature. 2000 Jul 6;406(6791):90-4.\n Cond790:Sorbitol_15'\n Cond884:10\n Cond939:4h\n Cond436:DBYmsn2/4_(real_strain)_+_37degrees_(20_min)\n
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Computational Genomics Lab, Tel-Aviv uniresity