{"id":3922,"date":"2017-06-08T10:25:18","date_gmt":"2017-06-08T10:25:18","guid":{"rendered":"http:\/\/acgt.cs.tau.ac.il\/?page_id=3922"},"modified":"2023-01-23T14:01:32","modified_gmt":"2023-01-23T14:01:32","slug":"latest-years-publications","status":"publish","type":"page","link":"https:\/\/acgt.cs.tau.ac.il\/?page_id=3922","title":{"rendered":"Latest years publications"},"content":{"rendered":"<h1>Publications<\/h1>\n<h2>Latest<\/h2>\n<p><a href=\"https:\/\/acgt.cs.tau.ac.il\/add-new-publication\/\">Add new publication<\/a><\/p>\n<p>\t<form style=\"display:none;\" autocomplete=\"off\" name=\"wpv-filter-3938\" action=\"\/index.php?rest_route=%2Fwp%2Fv2%2Fpages%2F3922&#038;wpv_view_count=3938\" method=\"get\" class=\"wpv-filter-form js-wpv-filter-form js-wpv-filter-form-3938 js-wpv-form-full js-wpv-dps-enabled js-wpv-ajax-results-submit-enabled\" data-viewnumber=\"3938\" data-viewid=\"3938\" data-viewhash=\"eyJuYW1lIjoibGF0ZXN0LXB1YmxpY2F0aW9ucyJ9\" data-viewwidgetid=\"0\" 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class=\"panel-heading\">\n    <h3 class=\"panel-title\">Filter by year \/ search by key words<\/h3>\n  <\/div> \n  <div class=\"panel-body\"> \n    <div class=\"row\"> \n <form role=\"form\">\n  <div class=\"abc-checkbox\">\n   <ul class=\"categorychecklist form-no-clear\"><li id=\"publication-year-198\"><label for=\"in-publication-year-198\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-198\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1993\" \/> 1993<\/label><\/li>\n<li id=\"publication-year-197\"><label for=\"in-publication-year-197\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-197\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1994\" \/> 1994<\/label><\/li>\n<li id=\"publication-year-196\"><label for=\"in-publication-year-196\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-196\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1995\" \/> 1995<\/label><\/li>\n<li id=\"publication-year-195\"><label for=\"in-publication-year-195\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-195\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1996\" \/> 1996<\/label><\/li>\n<li id=\"publication-year-194\"><label for=\"in-publication-year-194\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-194\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1997\" \/> 1997<\/label><\/li>\n<li id=\"publication-year-193\"><label for=\"in-publication-year-193\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-193\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1998\" \/> 1998<\/label><\/li>\n<li id=\"publication-year-192\"><label for=\"in-publication-year-192\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-192\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"1999\" \/> 1999<\/label><\/li>\n<li id=\"publication-year-191\"><label for=\"in-publication-year-191\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-191\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2000\" \/> 2000<\/label><\/li>\n<li id=\"publication-year-190\"><label for=\"in-publication-year-190\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-190\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2001\" \/> 2001<\/label><\/li>\n<li id=\"publication-year-189\"><label for=\"in-publication-year-189\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-189\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2002\" \/> 2002<\/label><\/li>\n<li id=\"publication-year-188\" class=\"popular-category\"><label for=\"in-publication-year-188\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-188\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2003\" \/> 2003<\/label><\/li>\n<li id=\"publication-year-187\" class=\"popular-category\"><label for=\"in-publication-year-187\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-187\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2004\" \/> 2004<\/label><\/li>\n<li id=\"publication-year-186\" class=\"popular-category\"><label for=\"in-publication-year-186\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-186\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2005\" \/> 2005<\/label><\/li>\n<li id=\"publication-year-185\" class=\"popular-category\"><label for=\"in-publication-year-185\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-185\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2006\" \/> 2006<\/label><\/li>\n<li id=\"publication-year-184\" class=\"popular-category\"><label for=\"in-publication-year-184\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-184\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2007\" \/> 2007<\/label><\/li>\n<li id=\"publication-year-183\" class=\"popular-category\"><label for=\"in-publication-year-183\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-183\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2008\" \/> 2008<\/label><\/li>\n<li id=\"publication-year-182\" class=\"popular-category\"><label for=\"in-publication-year-182\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-182\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2009\" \/> 2009<\/label><\/li>\n<li id=\"publication-year-181\" class=\"popular-category\"><label for=\"in-publication-year-181\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-181\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2010\" \/> 2010<\/label><\/li>\n<li id=\"publication-year-180\"><label for=\"in-publication-year-180\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-180\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2011\" \/> 2011<\/label><\/li>\n<li id=\"publication-year-179\"><label for=\"in-publication-year-179\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-179\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2012\" \/> 2012<\/label><\/li>\n<li id=\"publication-year-178\"><label for=\"in-publication-year-178\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-178\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2013\" \/> 2013<\/label><\/li>\n<li id=\"publication-year-177\"><label for=\"in-publication-year-177\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-177\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2014\" \/> 2014<\/label><\/li>\n<li id=\"publication-year-176\"><label for=\"in-publication-year-176\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-176\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2015\" \/> 2015<\/label><\/li>\n<li id=\"publication-year-175\" class=\"popular-category\"><label for=\"in-publication-year-175\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-175\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2016\" \/> 2016<\/label><\/li>\n<li id=\"publication-year-174\" class=\"popular-category\"><label for=\"in-publication-year-174\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-174\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2017\" \/> 2017<\/label><\/li>\n<li id=\"publication-year-222\"><label for=\"in-publication-year-222\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-222\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2018\" \/> 2018<\/label><\/li>\n<li id=\"publication-year-230\"><label for=\"in-publication-year-230\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-230\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2019\" \/> 2019<\/label><\/li>\n<li id=\"publication-year-285\"><label for=\"in-publication-year-285\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-285\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2020\" \/> 2020<\/label><\/li>\n<li id=\"publication-year-286\"><label for=\"in-publication-year-286\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-286\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2021\" \/> 2021<\/label><\/li>\n<li id=\"publication-year-287\"><label for=\"in-publication-year-287\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-287\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2022\" \/> 2022<\/label><\/li>\n<li id=\"publication-year-288\"><label for=\"in-publication-year-288\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-288\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2023\" \/> 2023<\/label><\/li>\n<li id=\"publication-year-292\"><label for=\"in-publication-year-292\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-292\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2024\" \/> 2024<\/label><\/li>\n<li id=\"publication-year-298\"><label for=\"in-publication-year-298\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-298\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2025\" \/> 2025<\/label><\/li>\n<li id=\"publication-year-304\"><label for=\"in-publication-year-304\" class=\"selectit\"><input type=\"checkbox\" id=\"in-publication-year-304\" class=\"js-wpv-filter-trigger\" name=\"wpv-publication-year[]\" value=\"2026\" \/> 2026<\/label><\/li>\n<\/ul>\n\n  <\/div>\n<\/form>\n    <div class=\"row\">\n      <div class=\"col-xs-5 col-sm-7 col-md-4\">\n     <input type=\"text\" name=\"wpv_post_search\"  class=\"js-wpv-filter-trigger-delayed faculty-search\" style=\"faculty-search-style\" \/>\n      <\/div>\n      <div class=\"col-xs-2 col-sm-3 col-md-2\">\n          <button type=\"submit\" class=\"btn btn-default wpv-submit-trigger js-wpv-submit-trigger\" style=\"style\">Search<\/button><\/div>\n      \n        <div class=\"col-xs-2 col-sm-1 col-md-2\">\n         <button type=\"button\" class=\"btn btn-default wpv-reset-trigger js-wpv-reset-trigger\" style=\"all-button\">Reset<\/button><\/div>\n           \n          <div class=\"col-xs-4 col-sm-1 col-md-4\">\n  <div style=\"display:none\" class=\"js-wpv-dps-spinner\"><button class=\"btn btn-info\"><span class=\"glyphicon glyphicon-refresh glyphicon-refresh-animate\"><\/span> Loading...<\/button><\/div>\n      <\/div> \n      <\/div> \n    <\/div>\n  <\/div>    \n <\/div>\n<\/div>\n\n<\/form>\n\n \n\n<div id=\"wpv-view-layout-3938\" class=\"js-wpv-view-layout js-wpv-layout-responsive js-wpv-view-layout-3938\" data-viewnumber=\"3938\" data-pagination=\"{&quot;id&quot;:&quot;3938&quot;,&quot;query&quot;:&quot;normal&quot;,&quot;type&quot;:&quot;disabled&quot;,&quot;effect&quot;:&quot;fade&quot;,&quot;duration&quot;:500,&quot;speed&quot;:5,&quot;pause_on_hover&quot;:&quot;disabled&quot;,&quot;stop_rollover&quot;:&quot;false&quot;,&quot;cache_pages&quot;:&quot;enabled&quot;,&quot;preload_images&quot;:&quot;enabled&quot;,&quot;preload_pages&quot;:&quot;enabled&quot;,&quot;preload_reach&quot;:1,&quot;spinner&quot;:&quot;builtin&quot;,&quot;spinner_image&quot;:&quot;https:\/\/acgt.cs.tau.ac.il\/wp-content\/plugins\/wp-views\/res\/img\/ajax-loader.gif&quot;,&quot;callback_next&quot;:&quot;&quot;,&quot;manage_history&quot;:&quot;enabled&quot;,&quot;has_controls_in_form&quot;:&quot;disabled&quot;,&quot;infinite_tolerance&quot;:&quot;0&quot;,&quot;max_pages&quot;:1,&quot;page&quot;:1,&quot;base_permalink&quot;:&quot;\/index.php?rest_route=%2Fwp%2Fv2%2Fpages%2F3922&amp;wpv_view_count=3938&amp;wpv_paged=WPV_PAGE_NUM&quot;,&quot;loop&quot;:{&quot;type&quot;:&quot;&quot;,&quot;name&quot;:&quot;&quot;,&quot;data&quot;:[],&quot;id&quot;:0}}\" data-permalink=\"\/index.php?rest_route=%2Fwp%2Fv2%2Fpages%2F3922&#038;wpv_view_count=3938\">\n\n\t\n\t\n\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/04\/arxiv_logo-wpcf_80x100.jpg\" title=\"arxiv_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Perspective on Bias in Biomedical AI: Preventing Downstream Healthcare Disparities<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2026\/04\/2604.14514v1.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>M. Rosen-Zvi, Y. Kan-Tor, M. Danziger, A. Ferretti, J. Aula-Blasco, J. Falcao, R. Shamir, M. Muszkat.<\/h4>\n     <a href=\"https:\/\/arxiv.org\/abs\/2604.14514\"><em>arXiv:2604.14514 (2026).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2026\/04\/CJASN_logo-wpcf_80x33.png\" title=\"CJASN_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>The Impact of Nephrology Referral on Chronic Kidney Disease Outcomes in Israel<\/h3>\n  <h4>T. Wertheimer, O. Noy-Klein, N. Erlich,  S. Kushnir, B. Rozen Zvi*, R. Shamir*, D. Bielopolski.<\/h4>\n     <a href=\"https:\/\/journals.lww.com\/cjasn\/abstract\/9900\/the_impact_of_nephrology_referral_on_chronic.888.aspx\"><em>Clinical Journal of the American Society of Nephrology   DOI: 10.2215\/CJN.0000001026 (2026).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/06\/microbiology_spect_logo.jpg\" title=\"microbiology_spect_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Race-dependent variability in the human tumor mycobiome<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2026\/04\/coster-et-al-2026.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Coster, T. Margalit, R. Ben-Ami, B. Boursi*, R. Shamir*.<\/h4>\n     <a href=\"https:\/\/doi.org\/10.1128\/spectrum.02310-25\"><em>Microbiology Spectrum, https:\/\/doi.org\/10.1128\/spectrum.02310-25 (2026).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/08\/npj_park_logo-2.png\" title=\"npj_park_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Optimizing Parkinson\u2019s Disease progression scales using computational methods<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/08\/s41531-026-01259-1.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>A. Benesh, R. N. Alcalay, A. Mirelman, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41531-026-01259-1\"><em>npj Parkinson's Disease 12, 46 https:\/\/doi.org\/10.1038\/s41531-026-01259-1 (2026).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2026\/01\/microbiome_logo-wpcf_80x100.jpg\" title=\"microbiome_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>ProFiT-SPEci-FISH: A Novel Approach for Linking Plasmids to Hosts in Complex Microbial Communities at the Single-Cell Level'<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2026\/01\/s40168-025-02238-z.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>A. Zorea, S. Mora\u00efs, D. Pellow, O. Gershoni-Yahalom, M. Probst, S. Nadler, R. Shamir, B. Rosental, N. Elia, I. Mizrahi.<\/h4>\n     <a href=\"https:\/\/link.springer.com\/article\/10.1186\/s40168-025-02238-z\"><em>Microbiome 10.1186\/s40168-025-02238-z (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/12\/cell_logo-wpcf_80x100.jpeg\" title=\"cell_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>HLA Export by Melanoma Cells Decoys Cytotoxic T Cells to Promote Immune Evasion<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/12\/1-s2.0-S0092867425013169-main.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Y. Chemla, O. Itzhaki, S. Melamed, C. Weller, Y. Sade, P. Manich, K. Reshef, N. Xenidis, A. Maliah, G. Levy, R. Parikh, O. Bartok, O. Levy, I. Tal, G. Aziel, A. Nissani, S. Yunger, D. Likonen, V. Kliminsky, T. Golan, C. Capron, V. Ace, R. Levy, D. Rasoulouniriana, Z. Eyal, Y. Barzilay, R. Balaban, A. Khateeb, R. Khosravi, A. Grau, T. Ziv, P. Greenberg, D. Netanely, H. Vaknin, X. Wu, Y. Amitay, R. Brenner, J. Mar\u00eda Mart\u00ednez G\u00f3mez, D. Hershkovitz, T. Yardeni, V. Zemser-Werner, O. Kobiler, Y. Friedmann, D. Bassan, R. Shamir, L. Eisenbach, N. Santana-Magal, M. Milyavsky, G. Eisenberg, L. Keren, M. Cohen, D. Gur, B. Barak, M. Lotem, D. Sprinzak, S. Greenberger, D. Fisher, M. J. Besser, M. Khaled, P. Close, R. Shapira, S. Apcher, A. Madi, M. P. Levesque, F. Rapino, Y. Carmi, S. Parikh, Y. Samuels, C. Levy.<\/h4>\n     <a href=\"https:\/\/www.cell.com\/cell\/fulltext\/S0092-8674(25)01316-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867425013169%3Fshowall%3Dtrue\"><em>Cell https:\/\/doi.org\/10.1016\/j.cell.2025.11.020 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/10\/BIORXIV2017-1-wpcf_80x100.png\" title=\"BIORXIV2017-1.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Pan-cancer analysis reveals genomic fidelity and evolution of patient-derived organoids<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/12\/2025.12.10.693393v1.full_.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Linoy Raz, Tal Ben-Yishay, Haia Khoury, Ron Saad, Amjad Zoabi, Giulia Orlandi, Sara Donzelli, Giovanni Blandino, Uri Ben-David<\/h4>\n     <a href=\"https:\/\/www.biorxiv.org\/content\/10.64898\/2025.12.10.693393v1\"><em>bioRxiv https:\/\/doi.org\/10.64898\/2025.12.10.693393 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/12\/msb-3-wpcf_80x53.png\" title=\"msb\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3><\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/12\/s44320-025-00170-w.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>P. Bheda, J. Hou, R. Aebersold, U. Alon, J. S. Bader, L. Bardwell, E. T. Liu, J. C. W. Locke, M. Mann, A. J. Millar, F. Naef, Y. Pilpel, R. Shamir, D. Vitkup.<\/h4>\n     <a href=\"https:\/\/link.springer.com\/article\/10.1038\/s44320-025-00170-w\"><em>Molecular Systems Biology 12: 1667-1673. doi: 10.1038\/s44320-025-00170-w (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/10\/RqjUmuNy_400x400-wpcf_80x100.jpg\" title=\"RqjUmuNy_400x400\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Integrating gene expression, mutation and copy number data to identify driver genes of recurrent chromosome-arm losses<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/10\/1-s2.0-S2211124725012264-main.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>R. Saad, R. Shamir*, U. Ben-David*.<\/h4>\n     <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2211124725012264\"><em>Cell Reports 44 (11), 25 November 2025, 116455 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/04\/arxiv_logo-wpcf_80x100.jpg\" title=\"arxiv_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>From Observational Data to Clinical Recommendations: A Causal Framework for Estimating Patient-level Treatment Effects and Learning Policies<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/07\/2507.11381v2.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>R. Gutman, S. Sheiba, O. Noy Klein, N. Dekel Bird, A. Gruber, D. Aronson, O. Caspi, U. Shalit<\/h4>\n     <a href=\"https:\/\/arxiv.org\/abs\/2507.11381\"><em>arXiv https:\/\/doi.org\/10.48550\/arXiv.2507.11381 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/09\/NAR_logo-wpcf_80x100.jpeg\" title=\"NAR_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/07\/gkaf607.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>G. Shanel, T-H. S. Hsieh, C. Cattoglio, H. Amira Haham, H-J. Chou, J. Li, R. Shamir, X. Darzacq, R. Elkon.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/nar\/article\/53\/13\/gkaf607\/8192815\"><em>Nucleic Acids Research 53 (13), gkaf607 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/06\/nature_med_logo-1-wpcf_80x55.png\" title=\"nature_med_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>A reference model for circulating hematopoietic stem cells with applications to diagnostics<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/06\/s41591-025-03716-5.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Furer N.*, Rappoport N.*, O. Milman, Tavor S., Lifshitz A., Bercovich A., Ben-Kiki O., Danin A., Kedmi M., Shipony Z., Lipson D., Meiri E., Yanai G., Shapira S., Arber N., Berdichevsky S., Tyner J., Joshi S., Landau D., Ganesan S., Dusaj N., Chamely P., Kaushansky N., Chapal-Ilani N., Shamir R., Tanay A., Shlush LI.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41591-025-03716-5\"><em>Nature Medicine https:\/\/doi.org\/10.1038\/s41591-025-03716-5 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/03\/PMLR_logo-2-wpcf_80x41.png\" title=\"PMLR_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Towards Regulatory-Confirmed Adaptive Clinical Trials: Machine Learning Opportunities and Solutions<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/03\/klein25a.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>O. Noy Klein, A. H\u00fcy\u00fck, R. Shamir, U. Shalit, M. van der Schaar<\/h4>\n     <a href=\"https:\/\/proceedings.mlr.press\/v258\/klein25a.html\"><em>Proc. 28th International Conference on Artificial Intelligence and Statistics (AISTATS), PMLR 258:4969-4977 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/02\/npg_dig_med_logo-1-wpcf_80x100.jpg\" title=\"npg_dig_med_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Predicting appropriateness of antibiotic treatment among ICU patients with hospital acquired infection<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/02\/s41746-024-01426-9.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>E. Rannon, E. Goldschmidt, D. Bernstein, A. Wasserman, M. Roimi, A. Shrot, D. Coster, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41746-024-01426-9\"><em>npj Digit. Med. 8, 87 https:\/\/doi.org\/10.1038\/s41746-024-01426-9 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/01\/PNAS_logo-e1736338544545-wpcf_80x79.png\" title=\"PNAS_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>The cGAS\u2013STING, p38 MAPK, and p53 pathways link genome instability to accelerated cellular senescence in ATM-deficient murine lung fibroblasts<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2025\/01\/haj-et-al-2025-the-cgas-sting-p38-mapk-and-p53-pathways-link-genome-instability-to-accelerated-cellular-senescence-in.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>M. Haj, Y. Frey, A. Levon, A. Maliah, T. Ben-Yishay, R. Slutsky, R. Smoom, Y. Tzfati, U. Ben-David, C. Levy, R. Elkon, Y. Ziv, Y. Shiloh<\/h4>\n     <a href=\"https:\/\/www.pnas.org\/doi\/10.1073\/pnas.2419196122\"><em>PNAS 122 (2) e2419196122, https:\/\/doi.org\/10.1073\/pnas.2419196122 (2025).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/science_logo-wpcf_80x100.jpeg\" title=\"science_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>A p62-dependent rheostat dictates micronuclei catastrophe and chromosome rearrangements<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/science.adj7446.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>S. Martin, S. Scorzoni, S. Cordone, A. Mazzagatti, G. V. Beznoussenko, A. L. Gunn, M. Di Bona, Y. Eliezer, G. Leor, T. Ben-Yishay, A. Loffreda, V. Cancila, M. C. Rainone, M. R. Ippolito, V. Martis, F. Bedin, M. Garr\u00e9, L. P. Vaites, P. Vasapolli, S. Polo, D. Parazzoli, C. Tripodi, A. A. Mironov, A. Cuomo, U. Ben-David, S. F. Bakhoum, E. M. Hatch, P. Ly, S. Santaguida.<\/h4>\n     <a href=\"https:\/\/www.science.org\/doi\/10.1126\/science.adj7446\"><em>Science adj7446, https:\/\/doi.org\/10.1126\/science.adj7446 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/CD_logo-wpcf_80x100.jpg\" title=\"CD_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/cd-23-0309.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>M. R. Ippolito, J. Zerbib, Y. Eliezer, E. Reuveni, S. Vigan\u00f2, G. De Feudis, E. D. Shulman, A. S. Kadmon, R. Slutsky, T. Chang, E. M. Campagnolo, S. Taglietti, S. Scorzoni, S. Gianotti, S. Martin, J. Muenzner, M. M\u00fclleder, N. Rozenblum, C. Rubolino, T. Ben-Yishay, K. Laue, Y. Cohen-Sharir, I. Vigorito, F. Nicassio, E. Ruppin, M. Ralser, F. Vazquez, S. Santaguida, U. Ben-David<\/h4>\n     <a href=\"https:\/\/aacrjournals.org\/cancerdiscovery\/article-abstract\/doi\/10.1158\/2159-8290.CD-23-0309\/748735\/Increased-RNA-and-Protein-Degradation-Is-Required?redirectedFrom=fulltext\"><em>Cancer Discovery CD-23-0309 https:\/\/doi.org\/10.1158\/2159-8290.CD-23-0309 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/ng_logo-wpcf_80x100.png\" title=\"ng_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Aneuploidy as a driver of human cancer<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/10\/s41588-024-01916-2.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>E. Sdeor, H. Okada, R. Saad, T. Ben-Yishay, U. Ben-David.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41588-024-01916-2\"><em>Nature Genetics s41588-024-01916-2, https:\/\/doi.org\/10.1038\/s41588-024-01916-2 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/09\/NAR_logo-wpcf_80x100.jpeg\" title=\"NAR_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>4CAC: 4-class classifier of metagenomic assemblies using machine learning and assembly graphs<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/09\/gkae799.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>L. Pu, R. Shamir.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/nar\/advance-article\/doi\/10.1093\/nar\/gkae799\/7759139\"><em>Nucleic Acids Research gkae799, https:\/\/doi.org\/10.1093\/nar\/gkae799 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/NAR.png\" title=\"NAR.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/05\/gkae388.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>A. Maier, M. Hartung, M. Abovsky, K. Adamowicz, G. D. Bader, S. Baier, D. B. Blumenthal, J. Chen, M. L. Elkjaer, C. Garcia-Hernandez, M. Hoffmann, I. Jurisica, M. Kotlyar, O. Lazareva, H. Levi, M. List, S. Lobentanzer, J. Loscalzo, N. Malod-Dognin, Q. Manz, J. Matschinske, M. Oubounyt, A. R. Pico, R. T. Pillich, J. M. Poschenrieder, D. Pratt, N. Pr\u017eulj, S. Sadegh, J. Saez-Rodriguez, S. Sakar, G. Shaked, R. Shamir, N. Trummer, U. Turhan, R. Wang, O. Zolotareva, J. Baumbach.<\/h4>\n     <a href=\"https:\/\/doi.org\/10.1093\/nar\/gkae388\"><em>Nucleic Acids Research gkae388 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/07\/nature-comm-cover-wpcf_80x100.jpg\" title=\"nature-comm-cover\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/05\/s41467-024-47272-x.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>A. Zorea, D. Pellow, L. Levin, S. Pilosof, J. Friedman, R. Shamir, I. Mizrahi.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41467-024-47272-x\"><em>Nature Communications 15, Article number: 3147, https:\/\/doi.org\/10.1038\/s41467-024-47272-x (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2019\/12\/bioinformatics-j-wpcf_80x100.jpg\" title=\"bioinformatics-j.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2024\/01\/btae036.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>H. Levi, R. Elkon*, R. Shamir*.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/bioinformatics\/advance-article\/doi\/10.1093\/bioinformatics\/btae036\/7587512?login=true\"><em>Bioinformatics, btae036, https:\/\/doi.org\/10.1093\/bioinformatics\/btae036 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/10\/Brain_Str_Fun_logo-wpcf_80x100.jpg\" title=\"Brain_Str_Fun_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Clustering the cortical laminae: in vivo parcellation<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/10\/s00429-023-02748-2.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>I. Shamir, Y. Assaf, R. Shamir.<\/h4>\n     <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s00429-023-02748-2?utm_source=rct_congratemailt&#038;utm_medium=email&#038;utm_campaign=oa_20240109&#038;utm_content=10.1007\/s00429-023-02748-2\"><em>Brain Structure and Function, https:\/\/doi.org\/10.1007\/s00429-023-02748-2 (2024).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/01\/fss23-wpcf_80x100.jpg\" title=\"fss23\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Risk Modeling of Time-Varying Covariates Using an Ensemble of Survival Trees: Predicting Future Cancer Events<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/01\/27711-Article-Text-31762-1-2-20240122.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Coster, E. Fischer, S. Shenhar-Tsarfaty, T. Menes, S. Berliner, O. Rogowski, D. Zeltser, I. Shapira, E. Halperin, S. Rosset, M. Gorfine, R. Shamir.<\/h4>\n     <a href=\"https:\/\/ojs.aaai.org\/index.php\/AAAI-SS\/article\/view\/27711\"><em>Proceedings of the AAAI Symposium Series, 2(1), 429-442. https:\/\/doi.org\/10.1609\/aaaiss.v2i1.27711 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/10\/medrxiv_logo-wpcf_80x100.jpg\" title=\"medrxiv_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>A feature ranking algorithm for clustering medical data<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/10\/2023.09.30.23296349v1.full_.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>E. Shpigelman, R. Shamir.<\/h4>\n     <a href=\"https:\/\/medrxiv.org\/cgi\/content\/short\/2023.09.30.23296349v1\"><em>MedRxiv doi: 10.1101\/2023.09.30.23296349 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/08\/logoResearchSquare-wpcf_80x100.jpg\" title=\"logoResearchSquare\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Inferring transcriptional activation and repression activity maps in single-nucleotide resolution using deep-learning<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/08\/a10f3978-451a-4ed6-b30c-67229c5f2a4c.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>T. Hait, R. Elkon, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.researchsquare.com\/article\/rs-3270775\/v1\"><em>Research Square https:\/\/doi.org\/10.21203\/rs.3.rs-3270775\/v1 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/08\/GR_Logo-wpcf_80x100.png\" title=\"GR_Logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Efficient minimizer orders for large values of $k$ using minimum decycling sets<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/08\/Genome-Res.-2023-Pellow-gr.277644.123.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Pellow, L. Pu, B. Ekim, L. Kotlar, B. Berger, R. Shamir, Y. Orenstein<\/h4>\n     <a href=\"https:\/\/genome.cshlp.org\/content\/early\/2023\/08\/09\/gr.277644.123.long\"><em>Genome Research DOI: 10.1101\/gr.277644.123 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/07\/download-e1689576023577-wpcf_80x100.png\" title=\"download\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Evaluation of European-based polygenic risk score for breast cancer on Ashkenazi Jewish women<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/07\/jmg-2023-109185.full_.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>H. Levi, S. Carmi, S. Rosset, R. Yerushalmi, A. Zick, T. Yablonski-Peretz, .... (127 members of the BCAC Consortium)..., S. Ben-Shachar, N. Elefant*, R. Shamir* and R. Elkon*.<\/h4>\n     <a href=\"https:\/\/jmg.bmj.com\/content\/early\/2023\/07\/13\/jmg-2023-109185\"><em>Journal of Medical Genetics doi:10.1136\/jmg-2023-109185 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/NAR.png\" title=\"NAR.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Integration of gene expression and DNA methylation data across different experiments<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/09\/gkad566.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Y. Itai, N. Rappoport, R. Shamir.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/nar\/advance-article\/doi\/10.1093\/nar\/gkad566\/7217038\"><em>Nucleic Acids Research,  gkad566, https:\/\/doi.org\/10.1093\/nar\/gkad566 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/07\/nature-comm-cover-wpcf_80x100.jpg\" title=\"nature-comm-cover\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/07\/41467_2023_Article_39549.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>N. Rappaport, E. Chomsky, T. Nagano, C. Seibert, Y. Lubling, Y. Baran, A. Lifshitz, W. Leung, Z. Mukamel, R. Shamir, P. Fraser, A. Tanay.<\/h4>\n     <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10310791\/\"><em>Nature Communications 14(1):3844. doi: 10.1038\/s41467-023-39549-4 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/Nature_Scientific_Reports-wpcf_80x100.jpg\" title=\"Nature_Scientific_Reports.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Clustering of clinical-echocardiographic phenotypes of covid-19 disease using machine-learning techniques<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/06\/s41598-023-35449-1.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>E. Shpigelman*, A. Hochstadt*, D. Coster, I. Merdler, E. Ghantous, Y. Szekely, Y, Lichter, P. Taieb, A. Banai, O. Sapir, Y. Granot, L. Lupu, A. Borohovitz, S. Sadon, S. Banai, R. Rubinshtein, Y. Topilsky, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41598-023-35449-1\"><em>Scientific Reports 13:8832 doi: 10.1038\/s41598-023-35449-1 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2019\/08\/PLOS_ONE-wpcf_80x87.jpg\" title=\"PLOS_ONE.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>The Effect of Body Mass Index Reduction on Intraocular Pressure in a Large, Prospective Population-based Cohort Study in Israel<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/05\/journal.pone_.0285759.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Coster, A. Rafie, N. Savion, R. Rachmiel, S. Kurtz, S. Berliner, I. Shapira, D. Zeltser, O. Rogowski, S. Shenhar-Tsarfaty, M. Waisbourd<\/h4>\n     <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0285759\"><em>PLoS One, https:\/\/doi.org\/10.1371\/journal.pone.0285759 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/04\/arxiv_logo-wpcf_80x100.jpg\" title=\"arxiv_logo\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Time-dependent Iterative Imputation for Multivariate Longitudinal Clinical Data<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2023\/04\/2304.07821.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Omer Noy, Ron Shamir<\/h4>\n     <a href=\"https:\/\/arxiv.org\/abs\/2304.07821\"><em>arXiv  https:\/\/doi.org\/10.48550\/arXiv.2304.07821 (2023).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/09\/PLOS_COMP_BIO_2020-wpcf_80x100.png\" title=\"PLOS_COMP_BIO_2020.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Parameterized syncmer schemes improve long-read mapping<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/12\/abhinav_pellow_journal.pcbi_.1010638.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>A. Dutta, D. Pellow, R. Shamir.<\/h4>\n     <a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1010638\"><em>PLOS Comp Bio, https:\/\/doi.org\/10.1371\/journal.pcbi.1010638 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/bioinformatics-j-wpcf_80x100.jpg\" title=\"bioinformatics-j.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>The DOMINO web-server for active module identification analysis.<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/Hagai_domino_in_bioinformatics_journal_btac067_feb2022.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>H. Levi, N. Rahmanian, R. Elkon, R. Shamir.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/bioinformatics\/advance-article\/doi\/10.1093\/bioinformatics\/btac067\/6525218?login=true\"><em>Bioinformatics, btac067, https:\/\/doi.org\/10.1093\/bioinformatics\/btac067 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/03\/CancerResearch.png\" title=\"CancerResearch.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Whole-genome duplication shapes the aneuploidy landscape of human cancers.<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/03\/hagai_uri_BD_can-21-2065.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Prasad, M. Bloomfield, H. Levi, K. Keuper, S. V. Bernhard, N. C. Baudoin, G. Leor, Y. Eliezer, M. Giam, C. Kit Wong, G. Rancati, Z. Storchov\u00e1, D. Cimini, U. Ben-David.<\/h4>\n     <a href=\"https:\/\/aacrjournals.org\/cancerres\/article\/doi\/10.1158\/0008-5472.CAN-21-2065\/681796\/Whole-genome-duplication-shapes-the-aneuploidy\"><em>Cancer Res, https:\/\/doi.org\/10.1158\/0008-5472.CAN-21-2065 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/05\/actaDV-wpcf_80x100.png\" title=\"actaDV.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Relationship Between Pemphigus Vulgaris Severity and PCR-positive Herpes Simplex Virus<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/05\/DanCo_ActaDV_may2022.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Baum, I.  Atar,  D. Coster,  S. Dovrat,  M. Solomon,  E. Sprecher,  T. Zeeli  and  A. Barzilai.<\/h4>\n     <a href=\"https:\/\/medicaljournalssweden.se\/actadv\/article\/view\/917\"><em>ActaDV, Vol. 102 (2022), DOI: https:\/\/doi.org\/10.2340\/actadv.v102.917 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/06\/Com_Bio-wpcf_80x100.jpg\" title=\"Com_Bio.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Data Set-Adaptive Minimizer Order Reduces Memory Usage in k-Mer Counting<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/06\/Flomin_cmb.2021.0599.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Flomin, D. Pellow and R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.liebertpub.com\/doi\/10.1089\/cmb.2021.0599\"><em>Journal of Computational Biology, Vol. 29, Pp. 1\u201314 DOI: 10.1089\/cmb.2021.0599 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/09\/bioinformatics-j-wpcf_80x100.jpg\" title=\"bioinformatics-j.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>3CAC: improving the classification of phages and plasmids in metagenomic assemblies using assembly graphs<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/09\/Lianrong_btac468.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>L. Pu and R. Shamir.<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/bioinformatics\/article\/38\/Supplement_2\/ii56\/6702013\"><em>Bioinformatics, Volume 38, Issue Supplement 2, September 2022, Pages ii56\u2013ii61, https:\/\/doi.org\/10.1093\/bioinformatics\/btac468 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/Nature_Scientific_Reports-wpcf_80x100.jpg\" title=\"Nature_Scientific_Reports.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>A machine learning model for predicting deterioration of COVID-19 inpatients<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/Omer_Noy_Dan_Coster_Nature_Sciientific_Reports_s41598-022-05822-7-1.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>O. Noy*, D. Coster*, M. Metzger, I. Attar, S. Shenhar-Tsafraty, S. Berliner, G. Rahav, O.Rogowski, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41598-022-05822-7\"><em>Nature Scientific Reports Article 2630 DOI 10.1038\/s41598-022-05822-7 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/nar_2021-wpcf_80x100.jpg\" title=\"nar_2021.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>CT-FOCS: a novel method for inferring cell type-specific enhancer-promoter maps.<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2022\/02\/Tom_Hait_gkac048_1_Feb2022.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>T.A. Hait, R. Elkon, R. Shamir.\r\n<\/h4>\n     <a href=\"https:\/\/academic.oup.com\/nar\/advance-article\/doi\/10.1093\/nar\/gkac048\/6517947\"><em>Nucleic Acids Research gkac048, https:\/\/doi.org\/10.1093\/nar\/gkac048 (2022).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/01\/molecular_SYSTEM_BIOLOGY-wpcf_80x100.jpg\" title=\"molecular_SYSTEM_BIOLOGY.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>DOMINO: a novel network-based module detection algorithm with reduced rate of false calls<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/01\/Hagai_DOMINO_msb.20209593.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>H. Levi, R. Elkon, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.embopress.org\/doi\/full\/10.15252\/msb.20209593\"><em>Molecular Systems Biology 17:e9593 (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/08\/ACM-BCB-wpcf_80x100.jpg\" title=\"ACM-BCB.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Improving the efficiency of de Bruijn graph construction using compact universal hitting sets<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/08\/yael_ben-ari_ACMBCB-proceedings.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>Y. Ben-Ari, D. Flomin, L. Pu, Y. Orenstein, R. Shamir.\r\n\r\n<\/h4>\n     <a href=\"https:\/\/dl.acm.org\/doi\/10.1145\/3459930.3469520\"><em>Proc. ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM-BCB), August 2021, Article No.: 4, pp 1\u20139, https:\/\/dl.acm.org\/doi\/10.1145\/3459930.3469520 (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/06\/Microbiome-wpcf_80x100.jpg\" title=\"Microbiome.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>SCAPP: An algorithm for improved plasmid assembly in metagenomes<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/06\/David_Pellow_SCAPP_micobiome_journal_June2021.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Pellow, M. Probst, O. Furman, A. Zorea, A. Segal, I. Mizrahi, R. Shamir.<\/h4>\n     <a href=\"https:\/\/microbiomejournal.biomedcentral.com\/articles\/10.1186\/s40168-021-01068-z\"><em>Microbiome 9, 144 (2021), https:\/\/doi.org\/10.1186\/s40168-021-01068-z (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/10\/bmc_womens_health-wpcf_80x100.jpg\" title=\"bmc_womens_health.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Contribution of clinical breast exam to cancer detection in women participating in a modern screening program.<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/10\/dan_coster_BMC_women_health_12905-021-01507-x.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>T.S. Menes,  D. Coster  and S. Shenhar-Tsarfaty.<\/h4>\n     <a href=\"https:\/\/bmcwomenshealth.biomedcentral.com\/articles\/10.1186\/s12905-021-01507-x\"><em>BMC Women's Health, 21(1) 368, pp.1-8., https:\/\/doi.org\/10.1186\/s12905-021-01507-x (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/12\/BMC_ifectious_diseases-wpcf_80x100.jpg\" title=\"BMC_ifectious_diseases.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>C-reactive protein velocity discriminates between acute viral and bacterial infections in patients who present with relatively low CRP concentrations<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/12\/dan_coster_BMC_s12879-021-06878-y.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Bernstein, D. Coster, S. Berliner, I. Shapira, D. Zeltser, O. Rogowski, A. Adler, O. Halutz, T. Levinson, O. Ritter, S. Shenhar-Tsarfaty & A. Wasserman.<\/h4>\n     <a href=\"https:\/\/bmcinfectdis.biomedcentral.com\/articles\/10.1186\/s12879-021-06878-y\"><em>BMC Infect Dis 21, 1210 (2021). https:\/\/doi.org\/10.1186\/s12879-021-06878-y (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/02\/oncogene_2021-wpcf_80x100.jpg\" title=\"oncogene_2021.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Classification of node-positive melanomas into prognostic subgroups using keratin, immune and melanogenesis expression patterns<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2021\/02\/dvir_oncogene_s41388-021-01665-0.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Netanely, S. Leibou, R. Parikh, N. Stern, H. Vaknine, R. Brenner, S. Amar, R. Haiat Factor, T. Perluk, J. Frand, E Nizri, D. Hershkovitz, V. Zemser-Werner, C. Levy, R. Shamir.<\/h4>\n     <a href=\"https:\/\/www.nature.com\/articles\/s41388-021-01665-0\"><em>Oncogene https:\/\/doi.org\/10.1038\/s41388-021-01665-0 (2021).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/01\/infection-wpcf_80x100.jpg\" title=\"infection.jpg\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>Using the kinetics of C-reactive protein response to improve the differential diagnosis between acute bacterial and viral infections<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/01\/Coster2019_Article_UsingTheKineticsOfC-reactivePr.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Coster, A. Wasserman, E. Fisher, O. Rogowski, D. Zeltser, I. Shapira, D. Bernstein, Ahuva Meilik, E. Raykhshtat, P. Halpern, S. Berliner, S. Shenhar-Tsarfaty, R. Shamir.<\/h4>\n     <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s15010-019-01383-6\"><em>Infection,  https:\/\/doi.org\/10.1007\/s15010-019-01383-6 (2020).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/05\/plos_comp_bio-wpcf_80x100.png\" title=\"plos_comp_bio.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>PlasClass improves plasmid sequence classification<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/05\/David_Pellow_may2020_journal.pcbi_.1007781.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>D. Pellow, I. Mizrahi, R. Shamir.<\/h4>\n     <a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1007781\"><em>PLoS Comput Biol, 16(4): e1007781. https:\/\/doi.org\/10.1371\/journal.pcbi.1007781 (2020).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\t\n\t\t<div class=\"row \">\n\t\t\t<div class=\"col-sm-12\"><div class=\"well\">\n  <div class=\"row\">\n  <div class=\"col-md-2\"><img decoding=\"async\" src=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/09\/PLOS_COMP_BIO_2020-wpcf_80x100.png\" title=\"PLOS_COMP_BIO_2020.png\" class=\"aligncenter img-thumbnail\" \/><\/div>\n  <div class=\"col-md-10\"><h3>MONET: Multi-omic patient module detection by omic selection<\/h3><span style=\"float: right;\"><a href=\"https:\/\/acgt.cs.tau.ac.il\/wp-content\/uploads\/2020\/09\/Nimrod_monet_journal.pcbi_.1008182.pdf\"><button class=\"btn btn-default\" type=\"button\">PDF<\/button><\/a><\/span>\n  <h4>N. Rappoport, R. Safra, R. Shamir.<\/h4>\n     <a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1008182\"><em>PLoS Computational Biology 16 (9) e1008182 (2020).<\/em><\/a><\/div>\n<\/div>    \n  <\/div>\n<\/div>\n\t\t<\/div>\n\t\t\n\t\n\t\n\t\n<\/div>\n<br \/>\n\t<a href=\"https:\/\/acgt.cs.tau.ac.il\/?page_id=3925\" target=\"_self\" role=\"button\" rel=\"noopener\"><br \/>\n\t\t\t\tGo to previous years publications<br \/>\n\t\t\t<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Publications Latest Add new publication Go to previous years publications<\/p>\n","protected":false},"author":9,"featured_media":0,"parent":0,"menu_order":17,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/pages\/3922"}],"collection":[{"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/users\/9"}],"replies":[{"embeddable":true,"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3922"}],"version-history":[{"count":12,"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/pages\/3922\/revisions"}],"predecessor-version":[{"id":5166,"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=\/wp\/v2\/pages\/3922\/revisions\/5166"}],"wp:attachment":[{"href":"https:\/\/acgt.cs.tau.ac.il\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3922"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}