Research

Theses

Graduation year:
Thesis Type:

Tom Hait

MSc thesis

Using large-scale high-throughput data for enhancer-promoter network inference

May 2017

Rami Eitan

MSc thesis

Reconstructing cancer karyotypes from paired-end reads and copy number data

June 2016

David Amar

PhD thesis

Novel methods for integrative analysis of heterogeneous large scale biomedical data

December 2015

Adi Maron-Katz

PhD thesis

Unsupervised characterization of human brain networks that are involved in emotional processing and regulation

October 2015

Yaron Orenstein

PhD thesis

Discovering motifs using high-throughput in vitro data

September 2014

Ron Zeira

MSc thesis

Post-silicon test optimization using methods from bioinformatics

January 2013

David Amar

MSc thesis

Using differential co-expression for dissecting biological processes and revealing disease specific gene regulation.

April 2012

Guy Karlebach

PhD thesis

Modeling and Analysis of Perturbations in Gene Regulatory Networks.

July 2012

Ofer Lavi

MSc thesis

Prior Knowledge Integration of Gene Networks Data into Gene Expression Analysis.

August 2010

Michal Ozery-Flato

PhD thesis

Computational Problems in Genome Rearrangements: from Evolution to Cancer.

October 2009

Sharon Bruckner

MSc thesis

Topology-Free Querying of Protein Interaction Networks.

August 2009

Chaim Linhart

PhD thesis

Discovering motifs in large genomic datasets.

July 2009

Igor Ulitsky

PhD thesis

Network-based algorithms for analysis of heterogeneous biomedical data.

July 2009

Yonit Halperin

MSc thesis

Discovery of motifs involved in transcriptional regulation.

April 2008

Michael Gutkin

MSc thesis

Feature selection methods for classification of gene expression profiles.

March 2008

Seagull Shavit

MSc thesis

Genome-wide dissection of cellular responses to DNA double-strand breaks using integrated analysis of expression microarrays and bioinformatics

September 2007

Ofir Davidovich

MSc thesis

Methods and tools in computational human genetics

October 2007

Israel Steinfeld

MSc thesis

The Influence of Chromatin Modifiers on Transcription

October 2007

Daniela Raijman

MSc thesis

A probabilistic model for the evolution of promoters

May 2007

Irit Gat-Viks

PhD thesis

Computational analysis of molecular networks: modeling and reconstruction

January 2007

Gad Kimmel

PhD thesis

Computational Problems in Modern Human Genetics

January 2006

Rotem Sorek

PhD thesis

The characteristics, regulation and evolution of human alternatively spliced exons

January 2006

Rani Elkon

PhD thesis

Development of Bioinformatics Methods for Analysis of Functional Genomics Data and Their Application to the Study of DNA Damage Responses

February 2006

Amos Tanay

PhD thesis

Computational Analysis of Transcriptional Programs: Function and Evolution

August 2005

Tzvika Hartman

PhD thesis

Combinatorial Algorithms for Genome Rearrangements and DNA Oligonucleotide Arrays

September 2004

Noga Amit

MSc thesis

The Bicluster Graph Editing Problem

September 2004

Adi Maron-Katz

MSc thesis

Tools for Analysis and Visualization of Gene Expression Data Obtained Using Microarrays

July 2004

Tamar Barzuza

MSc thesis

Computational Resolution and Tagging of Perfect Phylogeny Haplotypes

Feb 2004

Michal Ozery-Flato

MSc thesis

A Correction to the Theory of Sorting Genomes by Reversals and Translocations

June 2003

Chaim Linhart

MSc thesis

The Degenerate Primer Design Problem

November 2002

Dekel Tsur

PhD thesis

Algorithmic Problems in Graph Theory and Molecular Biology

2002

Nir Orlev

MSc thesis

Development of a Bioinformatic Tool for Interactive Study of Protein-Protein Interactions

September 2002

Adi Akavia

MSc thesis

Designing Multi-Route Synthesis in Combinatorial Chemistry - Complexity and Algorithms

September 2002

Roded Sharan

PhD thesis

Graph Modification Problems and their Applications to Genomic Research

August 2002

Itsik Pe'er

PhD thesis

Algorithmic Methods for Reconstruction of Biological Sequences, Gene Orders and Maps

January 2002

Amos Tanay

MSc thesis

Computational Expansion of Genetic Networks

November 2001

Dmitri Shmulevich

MSc thesis

Analysis of Oligonucleotide Array Data: Clone Preselection and Hybridization Models

2000

Assaf Natanzon

MSc thesis

Complexity and Approximation of Some Graph Modification Problems

1999

Guy Mayraz

MSc thesis

Algorithms for Physical Mapping with Non-Unique Probes

1998

Erez Hartuv

MSc thesis

Graph Algorithms for DNA Physical Mapping with Noisy Data

1998

Shai Litvak

MSc thesis

Efficient Algorithms for Constructing and Employing Variable-Length Markov Models of Language

January 1996

Itsik Pe'er

MSc thesis

Interval Graphs with Metric Constraints

1995

Yaron Pinto

MSc thesis

Efficient Algorithms for the Minimum Cost Flow Problem with Multiple Arcs

1990

Haim Kaplan

MSc thesis

A Primal-Dual Path Following Algorithm for Linear Programming with Box-Type Constraints

1989