Module arginine_biosynthesis




Database revision : gnsdb28.10
Date : Fri Feb 28 01:36:32 2003
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Cond158:sir2\n Cond217:yer050c\n Cond277:AUR1(tetpromoter)\n Cond698:gal3-gal\n Cond476:GCN4C/GCN4(R4760/R6257)\n Cond221:yer083c\n Cond104:npr2\n Cond164:sst2(haploid)\n Cond95:mac1\n Cond13:ase1(**12)\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Cond730:hda1\n Cond697:gal2-gal\n Cond315:37C_to_25C_shock_-_15_min\n Cond12:arg80\n Cond244:ymr010w\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond445:Msn4_overexpression\n Cond30:clb6\n Cond702:gal7-gal\n Cond391:aa_starv_1_h\n Cond517:sst2D/wtlog10(intensity)\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles.  Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond966:swi1,_YPD_(a)\n Cond788:NaCl_60'\n Cond245:ymr014w\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond677:DES459_(mec1)_-_log_phase_(IR_time_=_0_sample)\n Cond184:ubr1\n Cond335:constant_0.32_mM_H2O2_(10_min)_redo\n Cond123:rad57\n Cond395:Nitrogen_Depletion_30_min.\n Cond279:ERG11(tetpromoter)\n Cond701:gal6-gal\n Cond247:ymr029c\n Cond689:gal3+gal\n Cond216:yer044c(haploid)\n Cond86:imp2'(**12)\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond693:gal7+gal\n Cond226:yhl029c\n Cond482:WT+/-100mM3AT(SetC)(KNY164)\n Cond194:yap1\n mTRP2:anthranilate synthase Component I,anthranilate synthase comp\nonent I,tryptophan requiring\n mTRP4:anthranilate phosphoribosyl transferase,anthranilate phospho\nribosyl transferase,tryptophan requiring\n Cond145:rts1\n Cond71:gln3\n Cond767:Acid_40'\n Cond481:WT+/-100mM3AT(SetB)(491)\n Cond54:erg3(haploid)\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n Cond233:yhr039c\n Cond68:gas1\n Cond143:rrp6\n Cond512:GAL-STE5-CTM,3hrs.gallog10(intensity)\n Cond26:cka2\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond69:gcn4\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond108:pac2\n Cond205:yel033w\n Cond27:ckb2\n Cond394:aa_starv_6_h\n Cond731:hda1
\n Cond73:gyp1\n Cond691:gal5+gal\n Cond162:spf1\n Cond634:DES460_+_0.02%_MMS_-_15_min\n Cond230:yhr022c\n Cond475:0.5x/1xAA(MildLeu,HisStarvation)(R176)\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond25:cin5\n Cond742: Cond727:rpd3\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n  Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Cond39:dig1\n Cond160:sir4\n Cond135:rpl20a\n mCPA1:Carbamoyl phosphate synthetase, arginine specific,arginine s\npecific , carbamoyl phosphate synthetase,Null mutant is viab\nle\n mCPA2:carbamyl phosphate synthetase,carbamyl phosphate synthetase,\nNull mutant is viable\n Cond477:GCN4/gcn4Din100mM3AT(KNY164/KNY124)\n Cond664:mec1_plus_gamma_20_min\n Cond397:Nitrogen_Depletion_2_h\n Cond281:HMG2(tetpromoter)\n mARG1:arginosuccinate synthetase,arginosuccinate synthetase,Argini\nne requiring\n Cond316:37C_to_25C_shock_-_30_min\n mHOM2:threonine and methionine pathway,aspartic beta semi-aldehyde\n dehydrogenase,Homoserine requiring\n mARG3:Sixth step in arginine biosynthesis,ornithine carbamoyltrans\nferase,Arginine requiring\n Cond396:Nitrogen_Depletion_1_h\n Cond225:yhl013c\n mHOM3:First step in common pathway for methionine and threonine bi\nosynthesis,aspartate kinase (L-aspartate 4-P-transferase) (E\nC 2.7.2.4),Homoserine requiring; Borrelidin resistance\n mARG4:argininosuccinate lyase,argininosuccinate lyase,Arginine req\nuiring\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n mARG8:Acetylornithine aminotransferase,acetylornithine aminotransf\nerase,Arginine requiring\n Cond29:clb2\n Cond130:rml2(**13)\n Cond89:isw2\n Cond137:rpl34a(**9)\n mARG5,6:N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutam\nate kinase,N-acetyl-gamma-glutamyl-phosphate reductase and a\ncetylglutamate kinase,Arginine requiring\n Cond224:CMD1(tetpromoter)\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond190:vps8\n Cond140:rps24a(**9)\n Cond729:sin3\n Cond15:bim1(**15)\n Cond745: Cond19:bub3(**2,8,13)\n Cond112:pep12\n Cond90:jnm1\n Cond967:swi1,_YPD_(c)\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt.  Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond53:erg2\n Y-Stre.Acid:Remodeling of yeast genome expression in response to environ\nmental changes.  Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond940:6h\n Cond633:DES460_+_0.02%_MMS_-_5_min\n Cond937:t=0\n Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond298:Terbinafine\n mYOR302W:Unknown ,, Unknown\n Cond78:hir2\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond201:yel008w\n Cond229:yhr011w(**14)\n Cond271:yor051c(**14)\n Cond176:swi5\n Cond345:1_mM_Menadione_(10_min)redo\n mECM40:ExtraCellular Mutant,acetylornithine acetyltransferase,A Tn3\n insertion into this gene causes hypersensitivity to the cel\nl surface polymer perturbing agent calcofluor white.\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond287:2-deoxy-D-glucose\n mMET13:putative methylenetetrahydrofolate reductase (mthfr),methyle\nnetetrahydrofolate reductase (mthfr) (putative),Null mutant \nis viable and shows methionine auxotrophy; double disruption\n of MET12 and MET13 (the two putative mthfr genes) also conf\ners methionine auxotrophy, but has no other known phenotype \nat this time.\n Cond222:yer084w\n Cond48:ecm29\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond478:WT+/-10mM3AT(R491)\n Cond128:rgt1\n Cond144:rtg1\n Cond150:sbh2\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae.  Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond47:ecm18(**7)\n Cond43:dot4\n Y-Stre.NaCl:Remodeling of yeast genome expression in response to environ\nmental changes.  Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond63:fre6\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n gala.+gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond24:cem1\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n  Science. 1998 Oct 23;282(5389):699-705.\n Cond132:rnr1(haploid**9)\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond171:ste24(haploid)\n Cond117:pfd2(**14)\n Stress.Menadione:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond175:swi4\n Cond250:ymr031w-a\n Cond284:PMA1(tetpromoter)\n Cond153:sgs1\n Cond349:1_mM_Menadione_(50_min)redo\n Cond398:Nitrogen_Depletion_4_h\n mMET22:Putative phosphatase gene involved in salt tolerance and met\nhionine biogenesis; halotolerance,3'(2')5'-bisphosphate nucl\neotidase,Methionine requiring; lacks 3'-phosphoadenylylsulfa\nte (PAPS) reductase activity; unable to grow on sulfate as s\nole sulfur source\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n Cond294:Itraconazole\n Cond159:sir3\n Cond84:hst3\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond295:Lovastatin\n Cond348:1mM_Menadione_(40_min)_redo\n Cond968:swi1,_YPD_(d)\n Cond299:Tunicamycin\n Cond699:gal4-gal\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond392:aa_starv_2_h\n mORT1:Mitochondrial integral membrane protein, ornithine transport\ner,,Null mutant is viable, arginine bradytroph\n Cond641:DES459_(mec1-)_+_0.02%_MMS_-_15_min\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Cond958:t0.5_g/r_ratio\n Cond703:gal10-gal\n mCPA2 mCPA1
Cond458:YP_raffinose_vs_reference_pool_car-2\n Cond158:sir2\n mHIS4:histidinol dehydrogenase,histidinol dehydrogenase,Null mutan\nt is viable and requires histidine\n Cond277:AUR1(tetpromoter)\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Cond476:GCN4C/GCN4(R4760/R6257)\n Cond221:yer083c\n Cond494:wtħ5nMaF,30minlog10(intensity)\n Cond248:ymr030w\n Cond104:npr2\n Cond535:tec1D+50nMaF/wt+50nMaF,120minlog10(intensity)\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Cond164:sst2(haploid)\n Cond13:ase1(**12)\n Cond95:mac1\n Cond537:kss1D/wtlog10(intensity)\n Cond730:hda1\n mYOL106W:Unknown ,, Unknown\n Cond382:1M_sorbitol_-_90_min\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond244:ymr010w\n Cond289:Cycloheximide\n Cond81:hog1(haploid)\n Cond505:wtħ50nMaF,120minlog10(intensity)\n Cond522:fus3Dkss1D/wtlog10(intensity)\n Cond702:gal7-gal\n Cond391:aa_starv_1_h\n Cond517:sst2D/wtlog10(intensity)\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond166:ste11(haploid)\n Cond393:aa_starv_4_h\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles.  Science. 200\n0 Feb 4;287(5454):873-80\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond966:swi1,_YPD_(a)\n Cond245:ymr014w\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond184:ubr1\n Cond523:ste4D/wtlog10(intensity)\n Cond123:rad57\n Cond155:she4\n Cond279:ERG11(tetpromoter)\n Cond178:tec1(haploid)\n mYJR026W:Unknown ,, Unknown\n Cond247:ymr029c\n Cond508:bni1Dħ50nMaF,120minlog10(intensity)\n Cond61:fks1(haploid)\n Cond216:yer044c(haploid)\n Cond86:imp2'(**12)\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond524:ste5D/wtlog10(intensity)\n Cond226:yhl029c\n Cond194:yap1\n Cond145:rts1\n Cond481:WT+/-100mM3AT(SetB)(491)\n Cond536:tec1D/wtlog10(intensity)\n Cond54:erg3(haploid)\n Cond233:yhr039c\n Cond68:gas1\n Cond116:pex12\n Cond143:rrp6\n Cond542:fus3Dtec1D+50nMaF,30min/wtlog10(intensity)\n Cond52:erd1\n Cond662:mec1_plus_gamma_5_min\n Cond512:GAL-STE5-CTM,3hrs.gallog10(intensity)\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond69:gcn4\n Cond94:kss1(haploid)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mYLR334C:Unknown ,, Unknown\n Cond108:pac2\n Cond205:yel033w\n Cond27:ckb2\n Cond73:gyp1\n Cond162:spf1\n Cond76:hdf1\n Cond41:dig1,dig2(haploid)\n Cond230:yhr022c\n Cond475:0.5x/1xAA(MildLeu,HisStarvation)(R176)\n Cond92:kin3\n Cond25:cin5\n Cond969:swi1,_minimal_(a)\n Cond206:yel044w\n mYGL117W:Unknown ,, Unknown\n Cond727:rpd3\n Cond66:fus3,kss1(haploid)\n Cond461:21_deg_growth_ct-1\n Cond262:ymr258c\n Cond173:ste5(haploid)\n Chromo.chromo:Genomewide studies of histone deacetylase function in yeast.\n  Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13.\n Cond970:swi1,_minimal_(c)\n Cond511:GAL-STE4,3hrs.gallog10(intensity)\n Cond39:dig1\n Cond160:sir4\n Cond135:rpl20a\n mYJR028W:Unknown ,, Unknown\n Cond477:GCN4/gcn4Din100mM3AT(KNY164/KNY124)\n Cond40:dig1,dig2\n Cond526:ste11D/wtlog10(intensity)\n Cond664:mec1_plus_gamma_20_min\n Cond423:YPD_stationary_phase_4_h_ypd-1\n Cond397:Nitrogen_Depletion_2_h\n Cond292:Glucosamine\n mARG1:arginosuccinate synthetase,arginosuccinate synthetase,Argini\nne requiring\n Cond396:Nitrogen_Depletion_1_h\n Cond225:yhl013c\n mARG4:argininosuccinate lyase,argininosuccinate lyase,Arginine req\nuiring\n Cond260:ymr237w\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond29:clb2\n Cond137:rpl34a(**9)\n mARG5,6:N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutam\nate kinase,N-acetyl-gamma-glutamyl-phosphate reductase and a\ncetylglutamate kinase,Arginine requiring\n Cond188:vma8\n Cond971:swi1,_minimal_(d)_\n Cond224:CMD1(tetpromoter)\n Cond33:cnb1\n Cond190:vps8\n Cond172:ste4(haploid)\n Cond140:rps24a(**9)\n Cond99:med2(haploid)\n Cond729:sin3\n Cond15:bim1(**15)\n mYJR029W:Unknown ,, Unknown\n Cond516:rst1Drst2D/wtlog10(intensity)\n Cond112:pep12\n Cond90:jnm1\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt.  Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Cond53:erg2\n Cond286:YEF3(tetpromoter)\n Cond651:wt_plus_gamma_10_min\n Cond525:ste7D/wtlog10(intensity)\n Cond509:kss1Dħ50nMaF,30minlog10(intensity)\n Cond179:tom6\n Cond496:wtħ50nMaF,30minlog10(intensity)\n mYLR343W:Unknown ,, Unknown\n Cond753: Cond6:anp1\n Cond298:Terbinafine\n Cond495:wtħ15.8nMaF,30minlog10(intensity)\n Cond78:hir2\n COMP.CH:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond180:top1(haploid)\n mNIT1:nitrilase,nitrilase,\n Cond201:yel008w\n Cond466:steady_state_17_dec_C_ct-2\n Cond229:yhr011w(**14)\n Cond271:yor051c(**14)\n Cond176:swi5\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond506:bni1Dħ50nMaF,60minlog10(intensity)\n Cond287:2-deoxy-D-glucose\n Cond222:yer084w\n Cond48:ecm29\n Cond478:WT+/-10mM3AT(R491)\n Cond128:rgt1\n Cond465:steady_state_15_dec_C_ct-2\n Cond528:ste18D/wtlog10(intensity)\n Cond144:rtg1\n Cond150:sbh2\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae.  Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond47:ecm18(**7)\n Cond197:yar014c\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond527:ste12D/wtlog10(intensity)\n Cond460:17_deg_growth_ct-1\n Cond24:cem1\n Cond114:pet117\n Cond132:rnr1(haploid**9)\n Cond171:ste24(haploid)\n Cond175:swi4\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond501:wt+/-50nMaF,30minlog10(intensity)\n Cond250:ymr031w-a\n Cond284:PMA1(tetpromoter)\n Cond153:sgs1\n Cond252:ymr040w\n Cond398:Nitrogen_Depletion_4_h\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond534:tec1D+50nMaF/wt+50nMaF,30minlog10(intensity)\n Cond167:ste12(haploid)\n Cond294:Itraconazole\n Cond159:sir3\n Cond84:hst3\n Cond543:rst1Drst2Dtec1D/wtlog10(intensity)\n Cond497:wtħ158nMaF,30minlog10(intensity)\n mBNA1:biosynthesis of nicotinic acid,3-hydroxyanthranilic acid dio\nxygenase,Null mutant is viable, nicotinic acid auxotroph\n Cond168:ste18(haploid)\n Cond299:Tunicamycin\n Cond539:fus3Dtec1D/wtlog10(intensity)\n Cond161:sod1(haploid)\n Cond274:yor080w(**3)\n Cond174:ste7(haploid)\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond35:cup5\n Cond392:aa_starv_2_h\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n Cond665:mec1_plus_gamma_30_min\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n

this is an automaticly generated GENESYS report
Computational Genomics Lab, Tel-Aviv uniresity