Module aerobic_respiration




Database revision : gnsdb28.10
Date : Fri Feb 28 01:36:31 2003
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Cond72:gpa2\n Cond826:tlc1_Expt.1_Passage_7\n Cond458:YP_raffinose_vs_reference_pool_car-2\n PEX.Pex:Transcriptome profiling to identify genes involved in peroxi\nsome assembly and function.  J Cell Biol. 2002 Jul 22;158(2)\n:259-71.\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes.  Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n mSDH2:Succinate dehydrogenase (ubiquinone) iron-sulfur protein sub\nunit,succinate dehydrogenase (ubiquinone) iron-sulfur protei\nn subunit,Null mutant is viable\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response.  Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond418:YPD_1_d_ypd-2\n Cond95:mac1\n Cond13:ase1(**12)\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns.  J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond4:afg3(haploid)\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond834:tlc1_Expt.2_Passage_6\n Cond416:YPD_10_h__ypd-2\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond822:tlc1_Expt.1_Passage_3\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond802:CaFK30'\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mCOX4:subunit IV of cytochrome c oxidase,cytochrome c oxidase subu\nnit IV,Null mutant is viable and unable to grow on nonfermen\ntable carbon sources\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles.  Science. 200\n0 Feb 4;287(5454):873-80\n mCOX6:subunit VI of cytochrome c oxidase,cytochrome c oxidase subu\nnit,Null mutant is viable, sensitive to H2O2\n Cond429:YPD_stationary_phase_5_d_ypd-1\n mCOX8:Cytochrome-c oxidase chain VIII,cytochrome c oxidase chain V\nIII,Null mutant is viable, deficient in cellular respiration\n and cytochrome C oxidase activity\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond155:she4\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond749: Cond902:(77i1)_HBY4_YPGL_NormInt\n Cond216:yer044c(haploid)\n Cond452:sucrose_vs._reference_pool_car-1\n Cond569:cdc15_10\n Cond807:crz1/Ca30'\n Cond849:120_min\n mCYC7:iso-2-cytochrome c,iso-2-cytochrome c,Null mutant is viable\n Cond851:15_min\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mRIP1:oxidizes ubiquinol at center P in the protonmotive Q cycle m\nechanism, transferring one electron to cytochrome c1 and gen\nerating a low-potential ubisemiquinone anion which reduces t\nhe low-potential cytochrome b-566 heme group,Rieske iron-sul\nfur protein of the mitochondrial cytochrome bc1 complex,Null\n mutant is viable, unable to grow on nonfermentable carbon s\nources\n mCOX12:essential during assembly for full cytochrome c oxidase acti\nvity,cytochrome c oxidase subunit VIb,Null mutant is viable,\n grows poorly at room temperature, fails to grow on glycerol\n/ethanol media at 37 degrees\n Cond804:Ca/Ca+FK15'\n mCOX13:Modulates cytochrome c oxidase activity,cytochrome c oxidase\n subunit VIa , may specifically interact with ATP,Null mutan\nt is viable, shows slightly reduced growth rate on nonfermen\ntable carbon sources\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae.  Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond848:90_min\n Cond145:rts1\n Cond825:tlc1_Expt.1_Passage_6\n Cond187:vac8\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n Cond972:anc1\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond26:cka2\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond413:YPD_4_h_ypd-2\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond833:tlc1_Expt.2_Passage_5\n Cond27:ckb2\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond706:gal2gal80-gal\n Cond370:1.5_mM_diamide_(10_min)\n SSD1.ANC1: Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Cond206:yel044w\n Cond737: Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond570:cdc15_30\n mQCR7:ubiquinol-cytochrome c oxidoreductase subunit 7 (14 kDa),ubi\nquinol cytochrome C oxidoreductase subunit 7 (14 kDa),Null m\nutant is viable but shows no ubiquinol:cytochrome c oxidored\nuctase activity, is respiratory-deficient, and shows lowered\n levels of other subunits of complex III, such as the 11-kDa\n subunit VIII, the Rieske Fe-S protein and cytochrome b\n mQCR9:7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreducta\nse complex,ubiquinol cytochrome c oxidoreductase complex 7.3\n kDa subunit 9,Null mutant is viable, is unable to grow on n\non-fermentable carbon sources\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n mATP17:Subunit f of mitochondrial ATP synthase. Homologous to bovin\ne subunit f.,ATP synthase subunit f,No growth on glycerol\n mCYT1:Cytochrome c1,cytochrome c1,\n Cond837:tlc1_Expt.2_Passage_9__\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond801:CaFK15'\n mATP3:participates in catalysis of ATP hydrolysis/synthesis and in\n the assembly/stability of F1,ATP synthase gamma subunit,nul\nl mutant is viable; unable to utilize non-fermentable carbon\nd sources\n Cond423:YPD_stationary_phase_4_h_ypd-1\n mHAP4:Regulates respiratory functions; encodes divergent overlappi\nng transcripts,transcriptional activator protein of CYC1 (co\nmponent of HAP2/HAP3 heteromer),\n mQCR10:8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase \ncomplex,ubiqunol-cytochrome c oxidoreductase complex 8.5 kDa\n subunit,Null mutant is viable, even on nonfermentable carbo\nn sources, but shows reduced ubiquinol-cytochrome c oxidored\nuctase activity and loss of Rieske iron-sulfur protein from \nthe complex; qcr10 mutation exacerbates the temperature-sens\nitivty of qcr6 mutation\n Cond836:tlc1_Expt.2_Passage_8\n Cond448:galactose_vs._reference_pool_car-1\n RapamycinHap.hap_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins.  Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Cond896:STAT\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond824:tlc1_Expt.1_Passage_5\n Cond487:pho80_vs_WT\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond190:vps8\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond140:rps24a(**9)\n Cond414:YPD_6_h_ypd-2\n Cond15:bim1(**15)\n Cond447:ethanol_vs._reference_pool_car-1\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond323:heat_shock_29_to_37,_20_minutes\n Cond53:erg2\n Cond832:tlc1_Expt.2_Passage_4\n Cond855:pm38-30\n Cond457:YP_mannose_vs_reference_pool_car-2\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond472:steady_state_36_dec_C_ct-2_(repeat_hyb)\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond420:YPD_3_d_ypd-2\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond827:tlc1_Expt.1_Passage_8\n Cond449:glucose_vs._reference_pool_car-1\n Cond151:sbp1\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins.  Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast.  Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond419:YPD_2_d_ypd-2\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond844:expt7\n Cond431:YPD_stationary_phase_13_d_ypd-1\n mOM45:45-kDa mitochondrial outer membrane protein,45 kDa mitochond\nrial outer membrane protein,Null mutant is viable and shows \nnormal growth, viability, mitochondrial function and mitocho\nndrial protein import\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mSOL4:similar to SOL3,,\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond417:YPD_12_h_ypd-2\n Cond117:pfd2(**14)\n Cond806:crz1/Ca15'\n Cond823:tlc1_Expt.1_Passage_4\n mCOX5A:One of two genes (COX5A and COX5B, both nuclear-encoded) cod\ning for subunit V of cytochrome c oxidase; COX5A gene produc\nt is the predominantform of subunit V found in holocytochrom\ne c oxidase under normal growth conditions,cytochrome c oxid\nase chain Va,Null mutant is viable, respires at 10-15% of th\ne wild-type rate due to the presence of COX5B; cox5a cox5b d\nouble deletion mutants are completely non-respiratory\n Cond415:YPD_8_h_ypd-2\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis.  Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond327:29C_to_33C_-_30_minutes\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond831:tlc1_Expt.2_Passage_3\n Cond453:YP_ethanol_vs_reference_pool_car-2\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast.  Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond274:yor080w(**3)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion.  Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Cond421:YPD_5_d_ypd-2\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
Cond72:gpa2\n Cond826:tlc1_Expt.1_Passage_7\n Cond458:YP_raffinose_vs_reference_pool_car-2\n Cond541:fus3D+50nMaF,30min/wtlog10(intensity)\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes.  Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n mSDH1:flavoprotein subunit of succinate dehydrogenase,succinate de\nhydrogenase flavoprotein subunit,no growth on glycerol (unab\nle to respire)\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond418:YPD_1_d_ypd-2\n Cond13:ase1(**12)\n Cond95:mac1\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond834:tlc1_Expt.2_Passage_6\n Cond416:YPD_10_h__ypd-2\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond822:tlc1_Expt.1_Passage_3\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond802:CaFK30'\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mCOX4:subunit IV of cytochrome c oxidase,cytochrome c oxidase subu\nnit IV,Null mutant is viable and unable to grow on nonfermen\ntable carbon sources\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles.  Science. 200\n0 Feb 4;287(5454):873-80\n mCOX6:subunit VI of cytochrome c oxidase,cytochrome c oxidase subu\nnit,Null mutant is viable, sensitive to H2O2\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond624:DY1457_(wild_type)_3_mM_vs._10_uM_zinc_y13-75\n Cond155:she4\n Cond312:Heat_Shock_015_minutes_hs-2\n Cond683:MHY1_(crt1)_vs._CRY1_(wild_type)_-_log_phase\n Cond61:fks1(haploid)\n Cond452:sucrose_vs._reference_pool_car-1\n Cond569:cdc15_10\n Cond807:crz1/Ca30'\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mRIP1:oxidizes ubiquinol at center P in the protonmotive Q cycle m\nechanism, transferring one electron to cytochrome c1 and gen\nerating a low-potential ubisemiquinone anion which reduces t\nhe low-potential cytochrome b-566 heme group,Rieske iron-sul\nfur protein of the mitochondrial cytochrome bc1 complex,Null\n mutant is viable, unable to grow on nonfermentable carbon s\nources\n Cond804:Ca/Ca+FK15'\n Cond490:PHO81c_vs_WT_exp2_\n Cond367:dtt_240_min_dtt-2\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae.  Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond145:rts1\n Cond825:tlc1_Expt.1_Passage_6\n Cond187:vac8\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n Cond422:YPD_stationary_phase_2_h_ypd-1\n Cond972:anc1\n Cond427:YPD_stationary_phase_2_d_ypd-1\n mNDI1:NADH dehydrogenase (ubiquinone),NADH dehydrogenase (ubiquino\nne),\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond413:YPD_4_h_ypd-2\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mCOR1:44 kDa core protein of yeast coenzyme QH2 cytochrome c reduc\ntase,coenzyme QH2 cytochrome c reductase 44 kDa core protein\n subunit,deficiency in cytochrome b; slow growth on glycerol\n Cond874:30min\n Cond833:tlc1_Expt.2_Passage_5\n Cond706:gal2gal80-gal\n Cond370:1.5_mM_diamide_(10_min)\n Cond571:cdc15_50\n SSD1.ANC1: Cond230:yhr022c\n Cond714:t0+SSD1wt\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Cond21:bul1\n Cond891:G1MMS\n Cond206:yel044w\n Cond737: Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond461:21_deg_growth_ct-1\n mQCR2:40 kDa ubiquinol cytochrome-c reductase core protein 2,40 kD\na ubiquinol cytochrome-c reductase core protein 2,Null mutan\nt is viable and grows slowly on glycerol\n Cond570:cdc15_30\n Cond636:DES460_+_0.2%_MMS_-_45_min\n mQCR7:ubiquinol-cytochrome c oxidoreductase subunit 7 (14 kDa),ubi\nquinol cytochrome C oxidoreductase subunit 7 (14 kDa),Null m\nutant is viable but shows no ubiquinol:cytochrome c oxidored\nuctase activity, is respiratory-deficient, and shows lowered\n levels of other subunits of complex III, such as the 11-kDa\n subunit VIII, the Rieske Fe-S protein and cytochrome b\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Cond408:diauxic_shift_timecourse_13.5_h\n Cond750: Cond837:tlc1_Expt.2_Passage_9__\n mATP2:F(1)F(0)-ATPase complex beta subunit, mitochondrial,F(1)F(0)\n-ATPase complex beta subunit,Mutant displays a growth defect\n on glycerol\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mATP3:participates in catalysis of ATP hydrolysis/synthesis and in\n the assembly/stability of F1,ATP synthase gamma subunit,nul\nl mutant is viable; unable to utilize non-fermentable carbon\nd sources\n Cond455:YP_galactose_vs_reference_pool_car-2\n Cond423:YPD_stationary_phase_4_h_ypd-1\n mQCR10:8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase \ncomplex,ubiqunol-cytochrome c oxidoreductase complex 8.5 kDa\n subunit,Null mutant is viable, even on nonfermentable carbo\nn sources, but shows reduced ubiquinol-cytochrome c oxidored\nuctase activity and loss of Rieske iron-sulfur protein from \nthe complex; qcr10 mutation exacerbates the temperature-sens\nitivty of qcr6 mutation\n Cond836:tlc1_Expt.2_Passage_8\n Cond448:galactose_vs._reference_pool_car-1\n Cond896:STAT\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n mCTT1:cytoplasmic catalase T,catalase T,Null mutant is viable and \nheat sensitive\n Cond824:tlc1_Expt.1_Passage_5\n Cond487:pho80_vs_WT\n Cond188:vma8\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond447:ethanol_vs._reference_pool_car-1\n Cond15:bim1(**15)\n Cond898:RPN4\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond53:erg2\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond832:tlc1_Expt.2_Passage_4\n Cond457:YP_mannose_vs_reference_pool_car-2\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond820:tlc1_Expt.1_Passage_1\n Cond937:t=0\n Cond6:anp1\n mMIR1:Product of gene unknown,,Null mutant is viable on glucose co\nntaining media, but is unable to grow on a non-fermentable c\narbon source, shows reduced levels of mitochondrial proteins\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond459:YP_sucrose_vs_reference_pool_car-2\n Cond420:YPD_3_d_ypd-2\n Cond827:tlc1_Expt.1_Passage_8\n Cond893:SMMS\n Cond935:10h\n Cond449:glucose_vs._reference_pool_car-1\n Cond151:sbp1\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast.  Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n Cond424:YPD_stationary_phase_8_h_ypd-1\n Cond419:YPD_2_d_ypd-2\n Cond451:raffinose_vs._reference_pool_car-1\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond431:YPD_stationary_phase_13_d_ypd-1\n Cond278:CDC42(tetpromoter)\n mNDE1:Unknown ,, Unknown\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond877:MMS\n Cond875:60min\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond417:YPD_12_h_ypd-2\n Cond823:tlc1_Expt.1_Passage_4\n mCOX5A:One of two genes (COX5A and COX5B, both nuclear-encoded) cod\ning for subunit V of cytochrome c oxidase; COX5A gene produc\nt is the predominantform of subunit V found in holocytochrom\ne c oxidase under normal growth conditions,cytochrome c oxid\nase chain Va,Null mutant is viable, respires at 10-15% of th\ne wild-type rate due to the presence of COX5B; cox5a cox5b d\nouble deletion mutants are completely non-respiratory\n Cond415:YPD_8_h_ypd-2\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis.  Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond327:29C_to_33C_-_30_minutes\n Cond334:29C_+1M_sorbitol_to_33C_+_*NO_sorbitol_-_30_minutes\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond831:tlc1_Expt.2_Passage_3\n Cond453:YP_ethanol_vs_reference_pool_car-2\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast.  Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond161:sod1(haploid)\n Cond274:yor080w(**3)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion.  Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n
Cond72:gpa2\n Cond826:tlc1_Expt.1_Passage_7\n Cond458:YP_raffinose_vs_reference_pool_car-2\n mHAP4:Regulates respiratory functions; encodes divergent overlappi\nng transcripts,transcriptional activator protein of CYC1 (co\nmponent of HAP2/HAP3 heteromer),\n mATP7:ATP synthase d subunit,ATP synthase d subunit,glycerol minus\n phenotype; mitochondria have no detectable oligomycin-sensi\ntive ATPase activity; F1 loosely bound to the membranous por\ntion\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes.  Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond836:tlc1_Expt.2_Passage_8\n mGLT1:Glutamate synthase (NADH),glutamate synthase (NADH),Null mut\nant is viable\n Cond896:STAT\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n Cond410:diauxic_shift_timecourse_18.5_h\n Cond95:mac1\n Cond13:ase1(**12)\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns.  J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond487:pho80_vs_WT\n Cond824:tlc1_Expt.1_Passage_5\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n Cond834:tlc1_Expt.2_Passage_6\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond140:rps24a(**9)\n Cond416:YPD_10_h__ypd-2\n Cond15:bim1(**15)\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond822:tlc1_Expt.1_Passage_3\n Cond454:YP_fructose_vs_reference_pool_car-2\n Cond53:erg2\n Cond409:diauxic_shift_timecourse_15.5_h\n Cond832:tlc1_Expt.2_Passage_4\n Cond426:YPD_stationary_phase_1_d_ypd-1\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mCOX4:subunit IV of cytochrome c oxidase,cytochrome c oxidase subu\nnit IV,Null mutant is viable and unable to grow on nonfermen\ntable carbon sources\n Cond805:Ca/Ca+FK30'\n Mating.Mating:Signaling and circuitry of multiple MAPK pathways revealed b\ny a matrix of global gene expression profiles.  Science. 200\n0 Feb 4;287(5454):873-80\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond897:STATMMS\n Cond937:t=0\n Cond6:anp1\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond472:steady_state_36_dec_C_ct-2_(repeat_hyb)\n Cond155:she4\n Cond672:DES459_(mec1)_-_mock_irradiation_-_60_min\n Cond827:tlc1_Expt.1_Passage_8\n Cond449:glucose_vs._reference_pool_car-1\n Cond902:(77i1)_HBY4_YPGL_NormInt\n Cond151:sbp1\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n Cond452:sucrose_vs._reference_pool_car-1\n Cond807:crz1/Ca30'\n mCYC7:iso-2-cytochrome c,iso-2-cytochrome c,Null mutant is viable\n mWAR1:Unknown ,, Unknown\n mRIP1:oxidizes ubiquinol at center P in the protonmotive Q cycle m\nechanism, transferring one electron to cytochrome c1 and gen\nerating a low-potential ubisemiquinone anion which reduces t\nhe low-potential cytochrome b-566 heme group,Rieske iron-sul\nfur protein of the mitochondrial cytochrome bc1 complex,Null\n mutant is viable, unable to grow on nonfermentable carbon s\nources\n Cond804:Ca/Ca+FK15'\n mCOX13:Modulates cytochrome c oxidase activity,cytochrome c oxidase\n subunit VIa , may specifically interact with ATP,Null mutan\nt is viable, shows slightly reduced growth rate on nonfermen\ntable carbon sources\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast.  Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Cond450:mannose_vs._reference_pool__car-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae.  Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond145:rts1\n Cond825:tlc1_Expt.1_Passage_6\n Cond278:CDC42(tetpromoter)\n Cond187:vac8\n Cond835:tlc1_Expt.2_Passage_7\n Cond456:YP_glucose_vs_reference_pool_car-2\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n mSCM4:Protein that suppresses ts allele of CDC4 when overexpressed\n,,viable, suppressor of cdc4ts allele\n Cond875:60min\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond413:YPD_4_h_ypd-2\n Cond80:hmg1(haploid)\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond823:tlc1_Expt.1_Passage_4\n mCOX5A:One of two genes (COX5A and COX5B, both nuclear-encoded) cod\ning for subunit V of cytochrome c oxidase; COX5A gene produc\nt is the predominantform of subunit V found in holocytochrom\ne c oxidase under normal growth conditions,cytochrome c oxid\nase chain Va,Null mutant is viable, respires at 10-15% of th\ne wild-type rate due to the presence of COX5B; cox5a cox5b d\nouble deletion mutants are completely non-respiratory\n Cond415:YPD_8_h_ypd-2\n Cond874:30min\n Cond833:tlc1_Expt.2_Passage_5\n Cond27:ckb2\n Cond370:1.5_mM_diamide_(10_min)\n Cond706:gal2gal80-gal\n Cond682:MHY1_(crt1)_vs_CRY1_(wild_type)\n Cond230:yhr022c\n Cond885:20\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis.  Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n Calcin.Ca/Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond206:yel044w\n Cond737: Calcin.crz1:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond903:(77i2)_S150-2B_YPGL_NormInt\n Cond570:cdc15_30\n Cond636:DES460_+_0.2%_MMS_-_45_min\n mQCR6:ubiquinol-cytochrome c oxidoreductase subunit 6 (17 kDa),ubi\nquinol cytochrome C oxidoreductase subunit 6 (17 kDa),Disrup\ntants are viable but are temperature-sensitive petite, lacki\nng ubiquinol-cytochrome c oxidoreductase activity and showin\ng loss of assembly of cytochrome bc1 complex; qcr6 is suppre\nssed by multicopy QCR9; shows synthetic interactions with qc\nr10; synthetically lethal with grc5 and qsr2\n Cond161:sod1(haploid)\n Cond736: Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion.  Mol Biol Cell. 1998 Dec;9(12):3273-97.\n COMP.TE:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond938:2h\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n Cond671:DES459_(mec1)_-_mock_irradiation_-_30_min\n Cond641:DES459_(mec1-)_+_0.02%_MMS_-_15_min\n Cond514:GAL-STE12,3hrs.gallog10(intensity)\n Cond428:YPD_stationary_phase_3_d_ypd-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mYGR182C:Unknown ,, Unknown\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n
mRIP1:oxidizes ubiquinol at center P in the protonmotive Q cycle m\nechanism, transferring one electron to cytochrome c1 and gen\nerating a low-potential ubisemiquinone anion which reduces t\nhe low-potential cytochrome b-566 heme group,Rieske iron-sul\nfur protein of the mitochondrial cytochrome bc1 complex,Null\n mutant is viable, unable to grow on nonfermentable carbon s\nources\n Cond217:yer050c\n mQCR10:8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase \ncomplex,ubiqunol-cytochrome c oxidoreductase complex 8.5 kDa\n subunit,Null mutant is viable, even on nonfermentable carbo\nn sources, but shows reduced ubiquinol-cytochrome c oxidored\nuctase activity and loss of Rieske iron-sulfur protein from \nthe complex; qcr10 mutation exacerbates the temperature-sens\nitivty of qcr6 mutation\n mERG12:mevalonate catabolism,mevalonate kinase,Null mutant is invia\nble and unable to grow vegetatively or germinate spores; mut\nants exhibit increased mitotic stability of plasmids with we\nak ARS elements.\n mGLT1:Glutamate synthase (NADH),glutamate synthase (NADH),Null mut\nant is viable\n Cond783:Peroxide_60'\n Cond649:dun1-_+_0.02%_MMS_-_120_min\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond95:mac1\n Cond644:DES459_(mec1-)_+_0.02%_MMS_-_60_min\n mACS2:one of 2 acetyl-coA synthetases in yeast,acetyl CoA syntheta\nse,Null mutant is viable, and grows on ethanol or acetate as\n sole carbon source, but is unable to grow on glucose as sol\ne carbon source; acs1 acs2 double null mutant is inviable\n mYER156C:Unknown ,, Unknown\n Cond188:vma8\n Cond642:DES459_(mec1-)_+_0.02%_MMS_-_30_min\n Cond4:afg3(haploid)\n Cond648:dun1-_+_0.02%_MMS_-_90_min\n Cond647:dun1-_+_0.02%_MMs_-_30_min\n mHOF1:SH3 domain containing-protein required for cytokinesis,,Null\n mutant is defective in cytokinesis\n mMNN1:Alpha-1,3-mannosyltransferase,alpha-1,3-mannosyltransferase,\nNull mutant is viable\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mYEL033W:Unknown ,, Unknown\n mCOR1:44 kDa core protein of yeast coenzyme QH2 cytochrome c reduc\ntase,coenzyme QH2 cytochrome c reductase 44 kDa core protein\n subunit,deficiency in cytochrome b; slow growth on glycerol\n Cond637:DES460_+_0.02%_MMS_-_60_min\n mYPL207W:Unknown ,, Unknown\n mGRX4:Member of a glutaredoxin subfamily in Sc together with GRX3 \n& GRX5. Significant sequence diff. with the other glutaredox\nin subfamily, formed by the previously described GRX1 & GRX2\n glutaredoxins (Luikenhuis MBC 9:1081, 1998),glutaredoxin,Nu\nll mutant is viable and shows moderate sensitivity to oxidat\nive stress and increased oxidation levels of cell proteins\n Cond645:DES459_(mec1-)_+_0.02%_MMS_-_90_min\n mCOX4:subunit IV of cytochrome c oxidase,cytochrome c oxidase subu\nnit IV,Null mutant is viable and unable to grow on nonfermen\ntable carbon sources\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n mYOR356W:Unknown ,, Unknown\n mCOX6:subunit VI of cytochrome c oxidase,cytochrome c oxidase subu\nnit,Null mutant is viable, sensitive to H2O2\n Cond638:DES460_+_0.02%_MMS_-_90_min\n Cond937:t=0\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond35:cup5\n Cond643:DES459_(mec1-)_+_0.02%_MMS_-_45_min\n mCCC1:Functions in the homeostasis of both calcium and manganese i\nons,transmembrane Ca2+ transporter (putative),Wild-type comp\nlements csg1 (calcium sensitive-group) mutants when overexpr\nessed\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes.  Mol Biol Cell. 2001 Feb;12(2):323-37.\n mISA1:Iron Sulfur Assembly -- IscA/NifA homolog,,\n Cond646:DES459_(mec1-)_+_0.02%_MMS_-_120_min\n

this is an automaticly generated GENESYS report
Computational Genomics Lab, Tel-Aviv uniresity