Module 35S_primary_transcript_processing




Database revision : gnsdb28.10
Date : Fri Feb 28 01:36:31 2003
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Cond796:Ca5'\n Cond399:Nitrogen_Depletion_8_h\n Cond798:Ca30'\n Cond432:YPD_stationary_phase_22_d_ypd-1\n Pho85.pho85:Chemical inhibition of the Pho85 cyclin-dependent kinase rev\neals a role in the environmental stress response.  Proc Natl\n Acad Sci U S A. 2001 Oct 23;98(22):12578-83.\n Cond410:diauxic_shift_timecourse_18.5_h\n mRPS21B:Homology to rat S21,ribosomal protein S21B (S26B) (YS25),\n Cond675:MHY1_(dun1)_+_heat_20_min\n GCR1.gcr1:Understanding the growth phenotype of the yeast gcr1 mutant \nin terms of global genomic expression patterns.  J Bacteriol\n. 2000 Sep;182(17):4970-8.\n Cond981:F82G_pho4D_10_mM_1NaPP1\n Cond362:dtt_000_min__dtt-2\n Cond400:Nitrogen_Depletion_12_h\n Cond834:tlc1_Expt.2_Passage_6\n Cond697:gal2-gal\n Stress.HypoOsmot:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond416:YPD_10_h__ypd-2\n Cond810:Na45'\n Cond637:DES460_+_0.02%_MMS_-_60_min\n Cond890:G1\n Cond435:DBYmsn2-4-_37degree_heat_-_20_min\n Cond310:Heat_Shock_000_minutes_hs-2\n COMP.:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond873:10min\n Cond480:WT+/-100mM3AT(SetA)(R491)\n Cond429:YPD_stationary_phase_5_d_ypd-1\n Cond318:37C_to_25C_shock_-_60_min\n Cond673:DES460_(wild_type)_+_heat_20_min\n Cond155:she4\n TorRama.Series0:Partitioning the transcriptional program induced by rapamyci\nn among the effectors of the Tor proteins. Curr Biol. 2000 D\nec 14-28;10(24):1574-81\n Cond312:Heat_Shock_015_minutes_hs-2\n mENP2:Unknown ,, Unknown\n Cond569:cdc15_10\n Cond849:120_min\n mLOC1:Localization of mRNA,,Mutant exhibits slow growth at 30C\n Cond430:YPD_stationary_phase_7_d_ypd-1\n mYJR070C:Unknown ,, Unknown\n Cond879:MMC\n mNOG1:Nucleolar G-protein 1; LPG15w (working nomenclature),homolog\ns identified in human and Trypanosoma brucei , nucleolar G-p\nrotein (putative),Null mutant is inviable.\n Cond427:YPD_stationary_phase_2_d_ypd-1\n Cond662:mec1_plus_gamma_5_min\n gala.-gal:Integrated genomic and proteomic analyses of a systematicall\ny perturbed metabolic network.  Science. 2001 May 4;292(5518\n):929-34.\n Cond945:W303_YPD\n Cond443:DBYyap1_+_0.32_mM_H2O2_(20_min)\n Cond653:wt_plus_gamma_30_min\n Cond833:tlc1_Expt.2_Passage_5\n Cond370:1.5_mM_diamide_(10_min)\n Cond634:DES460_+_0.02%_MMS_-_15_min\n Stress.ColdShock:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond881:4NQO\n Cond303:Heat_Shock_20_minutes_hs-1\n Cond813:Na+FK30'\n Cond485:Low-Pi_vs_High-Pi_in_WT_(DBY7286)\n Cond636:DES460_+_0.2%_MMS_-_45_min\n Cond570:cdc15_30\n Cond639:DES460_+_0.02%_MMS_-_120_min\n Cond627:DY1457_(wild_type)_3_mM_vs._76_nM_zinc_y12-122\n Cond441:DBYmsn2/4_(real_strain)_+_0.32_mM_H2O2_(20_min)\n mTIF3:Suppressor of translation mutants,translation initiation fac\ntor eIF-4B,\n Cond408:diauxic_shift_timecourse_13.5_h\n mGUA1:GMP synthase,GMP synthase,Null mutant is viable but is a gua\nnine auxotroph\n Cond710:t2+SSD1\n Stress.dshift:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond801:CaFK15'\n Cond390:aa_starv_0.5_h\n Cond320:heat_shock_17_to_37,_20_minutes\n Cond316:37C_to_25C_shock_-_30_min\n Cond982:pho85D_10_mM_1NaPP1_\n Cond301:Heat_Shock_10_minutes_hs-1\n Calcin.CaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond887:t-BuOOH\n mBRX1:Essential nucleolar protein required for biogenesis of the 6\n0S ribosomal subunit,,inviable\n Cond440:DBYmsn2msn4_(good_strain)_+_0.32_mM_H2O2\n Cond337:constant_0.32_mM_H2O2_(30_min)_redo\n Cond941:SK1_YPD\n mRPL25:Homology to E. coli L23 and rat L23a,ribosomal protein L25 (\nrpl6L) (YL25),\n mYKL056C:Unknown ,, Unknown\n Cond800:CaFK5'\n mPRS1:ribose-phosphate pyrophosphokinase,ribose-phosphate pyrophos\nphokinase,\n Cond745: Cond371:1.5_mM_diamide_(20_min)\n Cond463:29_deg_growth_ct-1\n GCN4.gcn4:Transcriptional profiling shows that Gcn4p is a master regul\nator of gene expression during amino acid starvation in yeas\nt.  Mol Cell Biol. 2001 Jul;21(13):4347-68.\n Stress.DTT1:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond651:wt_plus_gamma_10_min\n Cond872:Zero1\n Stress.DTT2:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond326:29C_to_33C_-_15_minutes\n Cond855:pm38-30\n Cond638:DES460_+_0.02%_MMS_-_90_min\n mRPL30:Homology to rat and mouse L30,ribosomal protein L30 (L32) (r\np73) (YL38) large subunit,Null mutant is inviable.\n Cond635:DES460_+_0.02%_MMS_-_30_min\n Cond857:pm38-gtoe\n mRNT1:Ribonuclease III,ribonuclease III,Null mutant is viable, but\n very sick (Abou Elela and Ares 1998, Chanfreau et al 1998).\n Stress.NitroDepl:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond317:37C_to_25C_shock_-_45_min\n RapamycinDip.dip_ram:Rapamycin-modulated transcription defines the subset of nutr\nient-sensitive signaling pathways directly controlled by the\n Tor proteins.  Proc Natl Acad Sci U S A. 1999 Dec 21;96(26)\n:14866-70.\n UME6.ume6:The Ume6 regulon coordinates metabolic and meiotic gene expr\nession in yeast.  Proc Natl Acad Sci U S A. 2002 Oct 15;99(2\n1):13431-6.\n Y-Stre.Heat:Remodeling of yeast genome expression in response to environ\nmental changes.  Mol Biol Cell. 2001 Feb;12(2):323-37.\n Cond419:YPD_2_d_ypd-2\n Cond431:YPD_stationary_phase_13_d_ypd-1\n COMP.KO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond882:zero3\n Cond640:DES459_(mec1-)_+_0.02%_MMS_-_5_min\n mDBP2:ATP-dependent RNA helicase of DEAD box family,ATP dependent \nRNA helicase , dead box protein,Null mutant is inviable\n mUTP8:Unknown ,, Unknown\n mDBP6:Dead Box Protein 6,RNA helicase (putative),Null mutant is in\nviable; Dbp6p depletion leads to decreased production of the\n 27S and 7S precursors, resulting in a depletion of the matu\nre 25S and 5.8S rRNAs\n mTRM1:N2,N2-dimethylguanosine-specific tRNA methyltransferase,N2,N\n2-dimethylguanosine-specific tRNA methyltransferase,An uncha\nracterized allele affects a specific base modification of bo\nth cytoplasmic and mitochondrial tRNA.\n Cond811:Na60'\n Cond372:1.5_mM_diamide_(30_min)\n Stress.HeatVar:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond336:constant_0.32_mM_H2O2_(20_min)_redo\n Cond324:heat_shock_33_to_37,_20_minutes\n mYER049W:Unknown ,, Unknown\n mIMP4:Interacts With Mpp10. Imp4p is a specific component of the U\n3 snoRNP and is required for pre-18S rRNA processing.,,Null \nmutant is inviable\n Calcin.Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond815:Na+FK60'\n Cond453:YP_ethanol_vs_reference_pool_car-2\n Cond968:swi1,_YPD_(d)\n Cond442:DBYyap1-_+_0.3_mM_H2O2_(20_min)\n Cell Cycle.cdc15:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion.  Mol Biol Cell. 1998 Dec;9(12):3273-97.\n mMTR4:Dead-box family helicase required for mRNA export from nucle\nus,RNA helicase,Null mutant is inviable; a temperature-sensi\ntive mtr4 mutant accumulates poly(A)+ RNA in the nucleus at \n37 degrees\n Calcin.NaFK:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond559:alpha56\n Y-Stre.Peroxide:Remodeling of yeast genome expression in response to environ\nmental changes.  Mol Biol Cell. 2001 Feb;12(2):323-37.\n mRPL16B:Homology to rat ribosomal protein L13a,ribosomal protein L16\nB (L21B) (rp23) (YL15),\n Cond980:F82G_10_mM_1NaPP1\n Cond979:WT_10_mM_1NaPP1\n mBUD22:Hypothetical ORF,,Null mutant is viable; random budding in d\niploid null mutants\n Cond428:YPD_stationary_phase_3_d_ypd-1\n Cond304:Heat_Shock_30_minutes_hs-1\n fkh1,2sf.Series0:Two yeast forkhead genes regulate the cell cycle and pseudoh\nyphal growth.  Nature. 2000 Jul 6;406(6791):90-4.\n Cond436:DBYmsn2/4_(real_strain)_+_37degrees_(20_min)\n Cond958:t0.5_g/r_ratio\n Cond330:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_15_minutes\n Jelinski.Jelinski:Regulatory networks revealed by transcriptional profiling of\n damaged Saccharomyces cerevisiae cells: Rpn4 links base exc\nision repair with proteasomes.  Mol Cell Biol. 2000 Nov;20(2\n1):8157-67.\n Cond302:Heat_Shock_15_minutes_hs-1\n Cond418:YPD_1_d_ypd-2\n Cell Cycle.alpha:Comprehensive identification of cell cycle-regulated genes o\nf the yeast Saccharomyces cerevisiae by microarray hybridiza\ntion.  Mol Biol Cell. 1998 Dec;9(12):3273-97.\n Stress.diamide:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mAAH1:adenine aminohydrolase (adenine deaminase),adenine aminohydr\nolase (adenine deaminase),Null mutant is viable\n Cond315:37C_to_25C_shock_-_15_min\n Cond467:steady_state_21_dec_C_ct-2\n Cond674:DES459_(mec1)_+_heat_20_min\n Cond425:YPD_stationary_phase_12_h_ypd-1\n Stress.Carbon:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond911:(83i5)_S150-2B_YPD_NormInt\n Cond364:dtt_030_min__dtt-2\n Cond373:1.5_mM_diamide_(40_min)\n Cond822:tlc1_Expt.1_Passage_3\n Cond445:Msn4_overexpression\n Cond454:YP_fructose_vs_reference_pool_car-2\n mRPB8:16-kDa RNA polymerase subunit (common to polymerases I, II a\nnd III),16 kDa RNA polymerase subunit (common to polymerases\n I, II and III),Null mutant is inviable\n Cond409:diauxic_shift_timecourse_15.5_h\n mRPS13:Homology to rat S13,ribosomal protein S13 (S27a) (YS15),\n Cond300:Heat_Shock_05_minutes_hs-1\n Cond391:aa_starv_1_h\n mRPL6A:Homology to rat L6 and human L6,ribosomal protein L6A (L17A)\n (rp18) (YL16),\n Cond814:Na+FK45'\n Stress.aa_starv:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mDPH2:Diptheria toxin resistance protein, required for diphthamide\n biosynthesis,,Null mutant is viable\n Cond894:G2\n mRPS1B:Homologous to rat ribosomal protein S3A,ribosomal protein S1\nB (rp10B),\n Cond395:Nitrogen_Depletion_30_min.\n Cond553:alpha14\n Cond479:WT+/-100mM3AT(SetD)(R491)\n Cond306:Heat_Shock_60_minutes_hs-1\n Cond797:Ca15'\n Cond361:2.5mM_DTT_180_min_dtt-1\n tcl1.tcl1:The genome-wide expression response to telomerase deletion i\nn Saccharomyces cerevisiae.  Proc Natl Acad Sci U S A. 2002 \nJul 9;99(14):9316-21.\n Cond367:dtt_240_min_dtt-2\n mLHP1:Protein homologous to human La (SS-B) autoantigen,,Null muta\nnt is viable\n mYLR413W:Unknown ,, Unknown\n Cond313:Heat_Shock_030inutes__hs-2\n Stress.Heat1:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond708:t0+SSD1\n Stress.Heat2:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond481:WT+/-100mM3AT(SetB)(491)\n Cond385:Hypo-osmotic_shock_-_15_min\n Cond818:crz1/Na30'\n Cond378:1M_sorbitol_-_15_min\n mRPC40:RNA polymerase III (C) subunit,RNA polymerase III subunit,Nu\nll mutant is inviable.\n mRPL33A:Homology to rat L35a,ribosomal protein L33A (L37A) (YL37) (r\np47),Null mutant is viable, severely impaired in growth. rpl\n33a rpl33b double deletion mutants are inviable\n SGD.GO:Functional classification via a compendium of knockouts. Hug\nes et.al., cell 2000.\n Cond433:YPD_stationary_phase_28_d_ypd-1\n Cond374:1.5_mM_diamide_(50_min)\n mRPS5:ribosomal small subunit protein homologous to mammalian S5 (\nhas approx. 70% identity with human, rat and hydrozoan S5). \nIt is the least basic of the non-acidic ribosomal proteins. \nIt is phosphorylated in yeast.,ribosomal protein S5 (S2) (rp\n14) (YS8),null is inviable; transcription of RPS5 is sensiti\nve to heat-shock and carbon source shift.\n Cond959:t2_g/r_ratio\n Cond809:Na30'\n Cond325:29C_to_33C_-_5_minutes\n Cond965:ndt80_delete_mid_g/r_ratio_\n Cond859:ms221-30\n Cond366:dtt_120_min_dtt-2\n Cond977:F82G_pho4D_1_mM_1NaPP1\n Calcin.Ca:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond650:wt_plus_gamma_5_min\n mRPL27A:Homology to mammalian L27,ribosomal protein L27A,\n Cond652:wt_plus_gamma_20_min\n Cond899:RPN4_MMS__\n mPUB1:poly(A)+ RNA-binding protein,poly(A) binding protein,Null mu\ntant is viable\n mNOP1:nucleolar protein, homologous to mammalian fibrillarin,nucle\nolar protein , similar to mammalian fibrillarin,Null mutant \nis inviable. Temperature-sensitive alleles exhibit various d\nefects in rRNA processing.\n Cond978:pho85D_1_mM_1NaPP1_\n Cond396:Nitrogen_Depletion_1_h\n Cond305:Heat_Shock_40_minutes_hs-1\n Cond658:DES460_(wt)_-_mock_irradiation_-_5_min\n mNOP7:Required for normal pre-rRNA processing,,Null: lethal.\n Meiosis.Series0:The core meiotic transcriptome in budding yeasts.  Nat Genet\n. 2000 Dec;26(4):415-23.\n mRAS1:ras proto-oncogene homolog,ras homolog,\n Cond363:dtt_015_min_dtt-2\n Cond782:Peroxide_40'\n mYNR046W:Unknown ,, Unknown\n Stress.YPD:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond414:YPD_6_h_ypd-2\n Cond892:S\n Cond447:ethanol_vs._reference_pool_car-1\n Cond386:Hypo-osmotic_shock_-_30_min\n Stress.YPDStat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond967:swi1,_YPD_(c)\n Cond323:heat_shock_29_to_37,_20_minutes\n Cond488:pho85_vs_WT\n mYNR054C:Unknown ,, Unknown\n Cond426:YPD_stationary_phase_1_d_ypd-1\n Cond437:DBYyap1-_37degree_heat_-_20_min_(redo)\n Stress.WeakHeat:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond934:8h\n Cond322:heat_shock_25_to_37,_20_minutes\n Cond420:YPD_3_d_ypd-2\n Cond893:SMMS\n Cond379:1M_sorbitol_-_30_min\n Cond758:Heat_0'_(A)\n Stress.HeatSorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond434:DBY7286_37degree_heat_-_20_min\n Stress.H202:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond321:heat_shock_21_to_37,_20_minutes\n Cond783:Peroxide_60'\n SwiSnf.swisnf:Whole-genome expression analysis of snf/swi mutants of Sacch\naromyces cerevisiae.  Proc Natl Acad Sci U S A. 2000 Mar 28;\n97(7):3364-9.\n Cond878:MNNG\n Cond329:29C_+1M_sorbitol_to_33C_+_1M_sorbitol_-_5_minutes\n Cond835:tlc1_Expt.2_Passage_7\n Sporulation.Series0:The transcriptional program of sporulation in budding yeast.\n  Science. 1998 Oct 23;282(5389):699-705.\n Cond417:YPD_12_h_ypd-2\n Cond946:W303ume6_YPD\n mYJL122W:Unknown ,, Unknown\n Stress.Sorbitol:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond415:YPD_8_h_ypd-2\n Cond319:37C_to_25C_shock_-_90_min\n Stress.tempgrow:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Calcin.crz1Na:Genome-wide analysis of gene expression regulated by the cal\ncineurin/Crz1p signaling pathway in Saccharomyces cerevisiae\n.  J Biol Chem. 2002 Aug 23;277(34):31079-88\n Cond876:zero2\n Cond360:2.5mM_DTT_120_min_dtt-1\n pho.Pho:New components of a system for phosphate accumulation and po\nlyphosphate metabolism in Saccharomyces cerevisiae revealed \nby genomic expression analysis.  Mol Biol Cell. 2000 Dec;11(\n12):4309-21.\n mROK1:contains domains found in the DEAD protein family of ATP-dep\nendent RNA helicases; high-copy suppressor of kem1 null muta\nnt,,Null mutant is inviable\n Stress.Various:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n Cond411:diauxic_shift_timecourse_20.5_h\n Cond699:gal4-gal\n zap1.Series0:Genome-wide characterization of the Zap1p zinc-responsive re\ngulon in yeast.  Proc Natl Acad Sci U S A. 2000 Jul 5;97(14)\n:7957-62.\n Cond339:constant_0.32_mM_H2O2_(50_min)_redo\n mEMP70:identified as a 24 kDa cleavage product in endosome-enriched\n membrane fractions,,\n mPHO90:Low-affinity phosphate transporter,,\n Cond858:pm71-30\n Stress.tempsteady:Genomic expression programs in the response of yeast cells t\no environmental changes.  Mol Biol Cell. 2000 Dec;11(12):424\n1-57\n mRPS7B:Homology to human S7 and Xenopus S8,ribosomal protein S7B (r\np30),\n mNOP1 mNOP7

this is an automaticly generated GENESYS report
Computational Genomics Lab, Tel-Aviv uniresity