| Type: GE- Gene Expression ChIP - Tf Binding Pheno - Phenotype MS Complex - complex interaction using Mass Spec 2H - 2-Hybrid SynLet - Synthetic Lethality |
Short Name |
Full name |
Number of Arrays/Interactions |
Sub Type: ROSE: Rosetta AFFY: Affymetrix cDNA: R/G ratios |
Reference |
Link to PubMed |
|
| 0 |
GE |
COMP |
Rosetta Compendium (Huges et.al.) |
300 |
ROSE |
Functional classification via a compendium of knockouts.
Huges et.al., cell 2000. |
10929718 |
| 1 |
GE |
Stress |
Various Stress Conditions in yeast |
172 |
cDNA |
Genomic expression programs in the response of yeast cells
to environmental changes. Mol Biol Cell. 2000 Dec;11(12):4241-57 |
11102521 |
| 2 |
GE |
GCN4 |
Rosetta GCN4 () |
10 |
ROSE |
Transcriptional profiling shows that Gcn4p is a master
regulator of gene expression during amino acid starvation in yeast. Mol Cell
Biol. 2001 Jul;21(13):4347-68. |
g11390663 |
| 3 |
GE |
pho |
Pho system |
9 |
cDNA |
New components of a system for phosphate accumulation
and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic
expression analysis. Mol Biol Cell. 2000 Dec;11(12):4309-21. |
11102525 |
| 4 |
GE |
Mating |
Rosetta's Matting Cascade perturbations |
55 |
ROSE |
Signaling and circuitry of multiple MAPK pathways revealed
by a matrix of global gene expression profiles. Science. 2000 Feb 4;287(5454):873-80 |
g10657304 |
| 5 |
GE |
Cell Cycle |
Yeast Cell Cycle in different sync modes |
77 |
cDNA |
Comprehensive identification of cell cycle-regulated genes
of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol
Cell. 1998 Dec;9(12):3273-97. |
g9843569 |
| 6 |
GE |
zap1 |
Zap1 and zinc effects |
9 |
cDNA |
Genome-wide characterization of the Zap1p zinc-responsive
regulon in yeast. Proc Natl Acad Sci U S A. 2000 Jul 5;97(14):7957-62. |
g10884426 |
| 7 |
GE |
DNA_dam |
Response DNA Damage agents |
52 |
cDNA |
Genomic expression responses to DNA-damaging agents and
the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell. 2001 Oct;12(10):2987-3003 |
11598186 |
| 8 |
GE |
gala |
Galactose knockouts |
23 |
cDNA |
Integrated genomic and proteomic analyses of a systematically
perturbed metabolic network. Science. 2001 May 4;292(5518):929-34. |
g11340206 |
| 9 |
GE |
Chromo |
Chromatin remodeling complex |
6 |
CDNA |
Genomewide studies of histone deacetylase function in
yeast. Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13708-13. |
g11095743 |
| 10 |
GE |
fkh1,2sf |
Forkhead cell cycle regulators |
36 |
cDNA |
Two yeast forkhead genes regulate the cell cycle and pseudohyphal
growth. Nature. 2000 Jul 6;406(6791):90-4. |
10894548 |
| 11 |
GE |
Y-Stre |
Young lab environmental responses |
35 |
AFFY |
Remodeling of yeast genome expression in response to environmental
changes. Mol Biol Cell. 2001 Feb;12(2):323-37. |
g11179418 |
| 12 |
GE |
Calcin |
Calcineurin data set |
24 |
cDNA |
Genome-wide analysis of gene expression regulated by the
calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. J Biol Chem.
2002 Aug 23;277(34):31079-88 |
12058033 |
| 13 |
GE |
tcl1 |
TLC1 data |
18 |
cDNA |
The genome-wide expression response to telomerase deletion
in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9316-21. |
g12084816 |
| 14 |
GE |
PEX |
Per |
8 |
cDNA |
Transcriptome profiling to identify genes involved in
peroxisome assembly and function. J Cell Biol. 2002 Jul 22;158(2):259-71. |
g12135984 |
| 15 |
GE |
RapamycinDip |
RapamycinDip |
4 |
cDNA |
Rapamycin-modulated transcription defines the subset of
nutrient-sensitive signaling pathways directly controlled by the Tor proteins.
Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):14866-70. |
g10611304 |
| 16 |
GE |
RapamycinHap |
RapamycinHap |
4 |
cDNA |
Rapamycin-modulated transcription defines the subset of
nutrient-sensitive signaling pathways directly controlled by the Tor proteins.
Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):14866-70. |
g10611304 |
| 17 |
GE |
TorRama |
TorRama |
17 |
cDNA |
Partitioning the transcriptional program induced by rapamycin
among the effectors of the Tor proteins. Curr Biol. 2000 Dec 14-28;10(24):1574-81 |
11137008 |
| 18 |
GE |
Jelinski |
Jelinski response to various agents |
28 |
AFFY |
Regulatory networks revealed by transcriptional profiling
of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair
with proteasomes. Mol Cell Biol. 2000 Nov;20(21):8157-67. |
g11027285 |
| 19 |
GE |
GCR1 |
GCR1 |
17 |
AFFY |
Understanding the growth phenotype of the yeast gcr1 mutant
in terms of global genomic expression patterns. J Bacteriol. 2000 Sep;182(17):4970-8. |
g10940042 |
| 20 |
GE |
Meiosis |
Core Meiotic |
24 |
AFFY |
The core meiotic transcriptome in budding yeasts. Nat
Genet. 2000 Dec;26(4):415-23. |
g11101837 |
| 21 |
GE |
UME6 |
UME6 |
8 |
AFFY |
The Ume6 regulon coordinates metabolic and meiotic gene
expression in yeast. Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13431-6. |
g12370439 |
| 22 |
GE |
TPK |
iron and TPK1,2,3 |
8 |
AFFY |
The yeast A kinases differentially regulate iron uptake
and respiratory function. Proc Natl Acad Sci U S A. 2000 May 23;97(11):5984-8. |
g10811893 |
| 23 |
GE |
Sporulation |
Sporulation |
9 |
CDNA |
The transcriptional program of sporulation in budding
yeast. Science. 1998 Oct 23;282(5389):699-705. |
g9784122 |
| 24 |
GE |
SwiSnf |
SwiSnf |
6 |
CDNA |
Whole-genome expression analysis of snf/swi mutants of
Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3364-9. |
g10725359 |
| 25 |
GE |
Pho85 |
Pho85 |
12 |
CDNA |
Chemical inhibition of the Pho85 cyclin-dependent kinase
reveals a role in the environmental stress response. Proc Natl Acad Sci U
S A. 2001 Oct 23;98(22):12578-83. |
g11675494 |
| 26 |
ChIP |
YPD-TF |
TF Binding on YPD |
110 |
ChIP |
Transcriptional regulatory networks in Saccharomyces cerevisiae.
Science. 2002 Oct 25;298(5594):799-804 |
12399584 |
| 27 |
Pheno |
Giaever |
Phenotype in 6 conditions |
31 |
Pheno |
Functional profiling of the Saccharomyces cerevisiae genome.
Nature. 2002 Jul 25;418(6896):387-91 |
12140549 |
| 28 |
MS-Complex |
Ho |
Complexes in Yeast |
4177 |
Complex |
Systematic identification of protein complexes in Saccharomyces
cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3 |
11805837 |
| 29 |
2H |
Uetz |
2 hybrids in yeast |
1175 |
2H |
A comprehensive analysis of protein-protein interactions
in Saccharomyces cerevisiae. Nature. 2000 Feb 10;403(6770):623-7. |
10688190 |